Results 1 - 20 of 270 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21513 | 3' | -52.4 | NC_004812.1 | + | 57344 | 0.66 | 0.990242 |
Target: 5'- gGGggGGGGGGAGaggaa-GC-AGGGa -3' miRNA: 3'- gCCuuCCCCCUUCaaagagCGcUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 71995 | 0.66 | 0.990242 |
Target: 5'- cCGGGgcuGGGGcGcGGUcgUCUCGCGGucgcucGGGg -3' miRNA: 3'- -GCCUu--CCCC-CuUCAa-AGAGCGCU------UCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 155286 | 0.66 | 0.990242 |
Target: 5'- gGGGAGGGGcGGGg----CGCGgcGGg -3' miRNA: 3'- gCCUUCCCCcUUCaaagaGCGCuuCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 29778 | 0.66 | 0.990242 |
Target: 5'- gGGGAGGGGcGGGg----CGCGgcGGg -3' miRNA: 3'- gCCUUCCCCcUUCaaagaGCGCuuCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 104173 | 0.66 | 0.990242 |
Target: 5'- gCGGgcGGGGGGauGGgcggCgaugCGgGGAGGg -3' miRNA: 3'- -GCCuuCCCCCU--UCaaa-Ga---GCgCUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 115192 | 0.66 | 0.988907 |
Target: 5'- gCGGggGGgccGGGAAag--C-CGCGAGGGc -3' miRNA: 3'- -GCCuuCC---CCCUUcaaaGaGCGCUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 5944 | 0.66 | 0.988907 |
Target: 5'- cCGGGcacAGGGGGcagggcccgggGAGg--C-CGCGggGGg -3' miRNA: 3'- -GCCU---UCCCCC-----------UUCaaaGaGCGCuuCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 146888 | 0.66 | 0.988907 |
Target: 5'- gCGGucuGGGGuguGGggGUUgccCUCGUuuuGAGGGg -3' miRNA: 3'- -GCCu--UCCC---CCuuCAAa--GAGCG---CUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 36845 | 0.66 | 0.988907 |
Target: 5'- cCGGGcacAGGGGGcagggcccgggGAGg--C-CGCGggGGg -3' miRNA: 3'- -GCCU---UCCCCC-----------UUCaaaGaGCGCuuCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 16801 | 0.66 | 0.988766 |
Target: 5'- gGGgcGGGGGGAG--UCUggaggacgggcgcCGCGggGu -3' miRNA: 3'- gCCuuCCCCCUUCaaAGA-------------GCGCuuCc -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 118510 | 0.66 | 0.988189 |
Target: 5'- gGGGAGGGGGAGGagggaagaaagggggCGaGAGGGg -3' miRNA: 3'- gCCUUCCCCCUUCaaaga----------GCgCUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 149411 | 0.66 | 0.988189 |
Target: 5'- gGGGAGGGGGAGGagggaagaaagggggCGaGAGGGg -3' miRNA: 3'- gCCUUCCCCCUUCaaaga----------GCgCUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 84352 | 0.66 | 0.988041 |
Target: 5'- gCGGAAGcGGGGugcGGUggcgggccggcccuuUuaacUCUCGCGggGa -3' miRNA: 3'- -GCCUUC-CCCCu--UCA---------------A----AGAGCGCuuCc -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 7273 | 0.66 | 0.987435 |
Target: 5'- gGGGAGGGGGcGGcggC-CGCGuguGAGGc -3' miRNA: 3'- gCCUUCCCCCuUCaaaGaGCGC---UUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 38174 | 0.66 | 0.987435 |
Target: 5'- gGGGAGGGGGcGGcggC-CGCGuguGAGGc -3' miRNA: 3'- gCCUUCCCCCuUCaaaGaGCGC---UUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 150408 | 0.66 | 0.987435 |
Target: 5'- nGGAAGGGGGGAa------GgGAAGGg -3' miRNA: 3'- gCCUUCCCCCUUcaaagagCgCUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 24900 | 0.66 | 0.987435 |
Target: 5'- nGGAAGGGGGGAa------GgGAAGGg -3' miRNA: 3'- gCCUUCCCCCUUcaaagagCgCUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 70377 | 0.66 | 0.986966 |
Target: 5'- gCGGGauAGGGccaaggcgccgaacGGAGGUcgCUgcCGCGGAGGa -3' miRNA: 3'- -GCCU--UCCC--------------CCUUCAaaGA--GCGCUUCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 91748 | 0.66 | 0.985817 |
Target: 5'- uGGggGGGaGGAAGagcgCcCGCGAgauguGGGc -3' miRNA: 3'- gCCuuCCC-CCUUCaaa-GaGCGCU-----UCC- -5' |
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21513 | 3' | -52.4 | NC_004812.1 | + | 8870 | 0.66 | 0.985817 |
Target: 5'- gGGgcGGGGGAaaGGgaggagGCGGAGGa -3' miRNA: 3'- gCCuuCCCCCU--UCaaagagCGCUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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