miRNA display CGI


Results 1 - 20 of 454 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 5' -56.3 NC_004812.1 + 107373 0.66 0.913583
Target:  5'- gGACGCCCcccgcGCGAucGCCuCGGAcgGCaCCGc -3'
miRNA:   3'- -UUGCGGG-----CGCUuuUGG-GCCU--UGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 6924 0.66 0.913583
Target:  5'- uGCGCCCGCGggG--CCGGggUg--- -3'
miRNA:   3'- uUGCGGGCGCuuUugGGCCuuGaggc -5'
21513 5' -56.3 NC_004812.1 + 89270 0.66 0.913583
Target:  5'- gGACGCgcaggCCGCGGcgcGGCgCGGAGCcCCGg -3'
miRNA:   3'- -UUGCG-----GGCGCUu--UUGgGCCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 88836 0.66 0.913583
Target:  5'- -cCGCCCGCGc---CCCGGGcCgCCGc -3'
miRNA:   3'- uuGCGGGCGCuuuuGGGCCUuGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 102537 0.66 0.913583
Target:  5'- --aGCCCGCGAAGGCCgCG--AC-CCGc -3'
miRNA:   3'- uugCGGGCGCUUUUGG-GCcuUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 75161 0.66 0.913583
Target:  5'- gGAgGCCCcCGAucGCCUGGGGCcCUGg -3'
miRNA:   3'- -UUgCGGGcGCUuuUGGGCCUUGaGGC- -5'
21513 5' -56.3 NC_004812.1 + 82651 0.66 0.913583
Target:  5'- cGACGCCCaggGCGAcgGCuuCCGGcuCUUCGg -3'
miRNA:   3'- -UUGCGGG---CGCUuuUG--GGCCuuGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 105675 0.66 0.913583
Target:  5'- gGGCGgCCGCGGAGuUCCGGGuUUUCGc -3'
miRNA:   3'- -UUGCgGGCGCUUUuGGGCCUuGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 26053 0.66 0.913583
Target:  5'- gGACGcCCCGCaGcAGACCgCGGAggugGCUCuCGa -3'
miRNA:   3'- -UUGC-GGGCG-CuUUUGG-GCCU----UGAG-GC- -5'
21513 5' -56.3 NC_004812.1 + 37825 0.66 0.913583
Target:  5'- uGCGCCCGCGggG--CCGGggUg--- -3'
miRNA:   3'- uUGCGGGCGCuuUugGGCCuuGaggc -5'
21513 5' -56.3 NC_004812.1 + 82554 0.66 0.913583
Target:  5'- cGCGCCCGCcgcugccGCCCgaGGGGCUCg- -3'
miRNA:   3'- uUGCGGGCGcuuu---UGGG--CCUUGAGgc -5'
21513 5' -56.3 NC_004812.1 + 96013 0.66 0.912996
Target:  5'- gAGCGCCCccuccGCuacGGGACCUGGAcgcgggugcgcauGCUCCGc -3'
miRNA:   3'- -UUGCGGG-----CGc--UUUUGGGCCU-------------UGAGGC- -5'
21513 5' -56.3 NC_004812.1 + 117975 0.66 0.910027
Target:  5'- gGGCGCCCccggccucgcccggcGCGGAGACCCccgccgcGGACUCgGc -3'
miRNA:   3'- -UUGCGGG---------------CGCUUUUGGGc------CUUGAGgC- -5'
21513 5' -56.3 NC_004812.1 + 148876 0.66 0.910027
Target:  5'- gGGCGCCCccggccucgcccggcGCGGAGACCCccgccgcGGACUCgGc -3'
miRNA:   3'- -UUGCGGG---------------CGCUUUUGGGc------CUUGAGgC- -5'
21513 5' -56.3 NC_004812.1 + 98751 0.66 0.90761
Target:  5'- -cCGCCCGCGc---CCUGGAGCg-CGg -3'
miRNA:   3'- uuGCGGGCGCuuuuGGGCCUUGagGC- -5'
21513 5' -56.3 NC_004812.1 + 3407 0.66 0.90761
Target:  5'- -cCGCCCGCcucccCCCGGcggccCUCCGg -3'
miRNA:   3'- uuGCGGGCGcuuuuGGGCCuu---GAGGC- -5'
21513 5' -56.3 NC_004812.1 + 18480 0.66 0.90761
Target:  5'- cGCGCCCGCGggG-CCCaGAcacaggcagacgACcgCCGc -3'
miRNA:   3'- uUGCGGGCGCuuUuGGGcCU------------UGa-GGC- -5'
21513 5' -56.3 NC_004812.1 + 76027 0.66 0.90761
Target:  5'- gGGC-CCCGCGggGcCCCGaAACguUCCGg -3'
miRNA:   3'- -UUGcGGGCGCuuUuGGGCcUUG--AGGC- -5'
21513 5' -56.3 NC_004812.1 + 34308 0.66 0.90761
Target:  5'- -cCGCCCGCcucccCCCGGcggccCUCCGg -3'
miRNA:   3'- uuGCGGGCGcuuuuGGGCCuu---GAGGC- -5'
21513 5' -56.3 NC_004812.1 + 68383 0.66 0.90761
Target:  5'- --aGCCCGCGAuggccGACCCcuGGGugUCg- -3'
miRNA:   3'- uugCGGGCGCUu----UUGGG--CCUugAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.