miRNA display CGI


Results 1 - 20 of 971 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 3' -63.1 NC_004812.1 + 13240 0.66 0.668194
Target:  5'- cGCGGUCGUcagcucguaccgggaGGCCuccgacGUCgGGGCGGCGg- -3'
miRNA:   3'- -CGCCGGCG---------------CCGG------UAGgCCUGCUGCgc -5'
21518 3' -63.1 NC_004812.1 + 139858 0.66 0.668194
Target:  5'- -gGGcCCGCGGCCcccggggcgcccugcGUCgaCGGGCGA-GCGg -3'
miRNA:   3'- cgCC-GGCGCCGG---------------UAG--GCCUGCUgCGC- -5'
21518 3' -63.1 NC_004812.1 + 16472 0.66 0.668194
Target:  5'- gGCGGgucguguuuccgcccCCGUGuccGCCAccggCCGGGgGGCGCGg -3'
miRNA:   3'- -CGCC---------------GGCGC---CGGUa---GGCCUgCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 75950 0.66 0.665326
Target:  5'- cGCGGguuguacuuguucugCGCGGCCAgcgCCugcaGGCGGCGCa -3'
miRNA:   3'- -CGCCg--------------GCGCCGGUa--GGc---CUGCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 144996 0.66 0.664369
Target:  5'- cUGGCCGUGcGCCGcuaCGGACccugcucGCGCGg -3'
miRNA:   3'- cGCCGGCGC-CGGUag-GCCUGc------UGCGC- -5'
21518 3' -63.1 NC_004812.1 + 5268 0.66 0.664369
Target:  5'- gGCcGCCGCGGCCccgcgCuCGGcCGACucgGCGa -3'
miRNA:   3'- -CGcCGGCGCCGGua---G-GCCuGCUG---CGC- -5'
21518 3' -63.1 NC_004812.1 + 130776 0.66 0.664369
Target:  5'- gGCcGCCGCGGCCccgcgCuCGGcCGACucgGCGa -3'
miRNA:   3'- -CGcCGGCGCCGGua---G-GCCuGCUG---CGC- -5'
21518 3' -63.1 NC_004812.1 + 42365 0.66 0.664369
Target:  5'- gGCGGUguuuguCGCGGCCcgaCCGGcgcCGGCGUu -3'
miRNA:   3'- -CGCCG------GCGCCGGua-GGCCu--GCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 89476 0.66 0.664369
Target:  5'- -gGGCCGaGGUCGUCCGGuacucCGACa-- -3'
miRNA:   3'- cgCCGGCgCCGGUAGGCCu----GCUGcgc -5'
21518 3' -63.1 NC_004812.1 + 86758 0.66 0.664369
Target:  5'- uCGGCCaUGGCgCAg-CGG-CGACGCGg -3'
miRNA:   3'- cGCCGGcGCCG-GUagGCCuGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 68239 0.66 0.664369
Target:  5'- gGgGGCCGgGGCC--UCGGccuCGACGUc -3'
miRNA:   3'- -CgCCGGCgCCGGuaGGCCu--GCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 128850 0.66 0.664369
Target:  5'- aGCGGgUGguCGGUCAgcUCgGcGACGACGCGc -3'
miRNA:   3'- -CGCCgGC--GCCGGU--AGgC-CUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 39580 0.66 0.664369
Target:  5'- gGCGGCC-CGguGCCAggCCGGGCGGgGa- -3'
miRNA:   3'- -CGCCGGcGC--CGGUa-GGCCUGCUgCgc -5'
21518 3' -63.1 NC_004812.1 + 3172 0.66 0.664369
Target:  5'- cGgGGUCGgcgaccUGGCgCAUCCaGGcgGCGGCGCGg -3'
miRNA:   3'- -CgCCGGC------GCCG-GUAGG-CC--UGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 114202 0.66 0.664369
Target:  5'- aGCGGCCcCGGCCccUCCc-ACGAUGCc -3'
miRNA:   3'- -CGCCGGcGCCGGu-AGGccUGCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 111635 0.66 0.664369
Target:  5'- cGUGGCCGCgGGCC-UCCuGcgcgcccccuCGGCGCu -3'
miRNA:   3'- -CGCCGGCG-CCGGuAGGcCu---------GCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 3342 0.66 0.664369
Target:  5'- aGCGGgUGguCGGUCAgcUCgGcGACGACGCGc -3'
miRNA:   3'- -CGCCgGC--GCCGGU--AGgC-CUGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 8679 0.66 0.664369
Target:  5'- gGCGGCC-CGguGCCAggCCGGGCGGgGa- -3'
miRNA:   3'- -CGCCGGcGC--CGGUa-GGCCUGCUgCgc -5'
21518 3' -63.1 NC_004812.1 + 45636 0.66 0.664369
Target:  5'- aCGGCCGC-GCUGcCCGcGGCGAUaGCGa -3'
miRNA:   3'- cGCCGGCGcCGGUaGGC-CUGCUG-CGC- -5'
21518 3' -63.1 NC_004812.1 + 20886 0.66 0.664369
Target:  5'- cGCccGCCG-GGCCcacgGUCgGGAUGACGCc -3'
miRNA:   3'- -CGc-CGGCgCCGG----UAGgCCUGCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.