miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 5' -58.1 NC_004812.1 + 61112 0.66 0.847082
Target:  5'- cGGCGCCCCGCggCgCg--CCGGcgCCCg -3'
miRNA:   3'- -UUGCGGGGCGgaGaGauaGGCUa-GGG- -5'
21518 5' -58.1 NC_004812.1 + 105527 0.66 0.847082
Target:  5'- cGCGCUCgGCCUCguaccgCCGGcguuuUCCCg -3'
miRNA:   3'- uUGCGGGgCGGAGagaua-GGCU-----AGGG- -5'
21518 5' -58.1 NC_004812.1 + 65531 0.66 0.847082
Target:  5'- uGGCGCCCCcCCUCgccc-CCGGUCUUc -3'
miRNA:   3'- -UUGCGGGGcGGAGagauaGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 47398 0.66 0.844712
Target:  5'- -uCGCCCCGCCggggcaccguaccaUCUaccugUGUCCGGUgCUg -3'
miRNA:   3'- uuGCGGGGCGG--------------AGAg----AUAGGCUAgGG- -5'
21518 5' -58.1 NC_004812.1 + 92317 0.66 0.839119
Target:  5'- -uCGCCCCGCCgcccgCUCg--CgCGucUCCCc -3'
miRNA:   3'- uuGCGGGGCGGa----GAGauaG-GCu-AGGG- -5'
21518 5' -58.1 NC_004812.1 + 4406 0.66 0.839119
Target:  5'- gGugGUCCCGCCgcaCUCgccugcCCGAggcggCCCc -3'
miRNA:   3'- -UugCGGGGCGGa--GAGaua---GGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 151641 0.66 0.839119
Target:  5'- cGCcCCCCGCCUCgccgccgCCGGccgCCCg -3'
miRNA:   3'- uUGcGGGGCGGAGagaua--GGCUa--GGG- -5'
21518 5' -58.1 NC_004812.1 + 124459 0.66 0.839119
Target:  5'- gGGCGCCCCGCCg--Cgg-CgGGggCCCg -3'
miRNA:   3'- -UUGCGGGGCGGagaGauaGgCUa-GGG- -5'
21518 5' -58.1 NC_004812.1 + 35307 0.66 0.839119
Target:  5'- gGugGUCCCGCCgcaCUCgccugcCCGAggcggCCCc -3'
miRNA:   3'- -UugCGGGGCGGa--GAGaua---GGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 55850 0.66 0.839119
Target:  5'- cGGCGaCUgCGCC-CUCgGUCUGGUCCUc -3'
miRNA:   3'- -UUGC-GGgGCGGaGAGaUAGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 26132 0.66 0.839119
Target:  5'- cGCcCCCCGCCUCgccgccgCCGGccgCCCg -3'
miRNA:   3'- uUGcGGGGCGGAGagaua--GGCUa--GGG- -5'
21518 5' -58.1 NC_004812.1 + 121597 0.66 0.839119
Target:  5'- gGGC-CCCCGCCgagCUCg--CCGAcCUCa -3'
miRNA:   3'- -UUGcGGGGCGGa--GAGauaGGCUaGGG- -5'
21518 5' -58.1 NC_004812.1 + 96051 0.66 0.830974
Target:  5'- cAUGCUCCGCCggccCUCccUCuCGAUCCg -3'
miRNA:   3'- uUGCGGGGCGGa---GAGauAG-GCUAGGg -5'
21518 5' -58.1 NC_004812.1 + 14067 0.66 0.830974
Target:  5'- --aGCCCCGCCUCg----UCGAUCa- -3'
miRNA:   3'- uugCGGGGCGGAGagauaGGCUAGgg -5'
21518 5' -58.1 NC_004812.1 + 58076 0.66 0.830974
Target:  5'- cGGCGCCCUGCgacggCUCgucgCCGGggccgCCCg -3'
miRNA:   3'- -UUGCGGGGCGga---GAGaua-GGCUa----GGG- -5'
21518 5' -58.1 NC_004812.1 + 68886 0.66 0.830974
Target:  5'- cGGCGCCcgcgCCGCCUCcCgcUCgCGGUCgCCa -3'
miRNA:   3'- -UUGCGG----GGCGGAGaGauAG-GCUAG-GG- -5'
21518 5' -58.1 NC_004812.1 + 21940 0.66 0.829324
Target:  5'- -cCGCCCCccuccucgcgagcGCCUC-CUGcaggaccUCCGggCCCa -3'
miRNA:   3'- uuGCGGGG-------------CGGAGaGAU-------AGGCuaGGG- -5'
21518 5' -58.1 NC_004812.1 + 58916 0.66 0.822654
Target:  5'- cACGUCCC-CCUCgaag-CCGGUCUCg -3'
miRNA:   3'- uUGCGGGGcGGAGagauaGGCUAGGG- -5'
21518 5' -58.1 NC_004812.1 + 7080 0.66 0.820969
Target:  5'- aGGCGCCCUcucccuuuuuuuCCUCUCUGUCUc-UCCCc -3'
miRNA:   3'- -UUGCGGGGc-----------GGAGAGAUAGGcuAGGG- -5'
21518 5' -58.1 NC_004812.1 + 37981 0.66 0.820969
Target:  5'- aGGCGCCCUcucccuuuuuuuCCUCUCUGUCUc-UCCCc -3'
miRNA:   3'- -UUGCGGGGc-----------GGAGAGAUAGGcuAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.