miRNA display CGI


Results 1 - 20 of 686 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21519 5' -66.1 NC_004812.1 + 109689 0.65 0.530945
Target:  5'- cGGCGgauGUGUCCGccgcggcggcggccGCCgCGCCCGaCCc -3'
miRNA:   3'- cCCGCac-CACGGGC--------------UGGgGCGGGC-GG- -5'
21519 5' -66.1 NC_004812.1 + 145784 0.65 0.530035
Target:  5'- cGGCGUGGccgaagaccugcgUGUCCucgcggagacgugcGGCCCCGCCggaGCg -3'
miRNA:   3'- cCCGCACC-------------ACGGG--------------CUGGGGCGGg--CGg -5'
21519 5' -66.1 NC_004812.1 + 73904 0.66 0.528216
Target:  5'- cGGGCGagccgccgucggccGGcGCCCagcGGCgCCUGCUCGCCc -3'
miRNA:   3'- -CCCGCa-------------CCaCGGG---CUG-GGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 126296 0.66 0.528216
Target:  5'- gGGGCcguuccUGGUGCCCgcggagguccccaggGACCCCucggcgugcugcGCCCuggGCCc -3'
miRNA:   3'- -CCCGc-----ACCACGGG---------------CUGGGG------------CGGG---CGG- -5'
21519 5' -66.1 NC_004812.1 + 57065 0.66 0.524585
Target:  5'- cGGGcCGcGGUcgGCuCCGACaCCGCgUCGCCg -3'
miRNA:   3'- -CCC-GCaCCA--CG-GGCUGgGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 85527 0.66 0.524585
Target:  5'- aGGCaccGGUcGCCgaacGCCCCGCgCCGCCc -3'
miRNA:   3'- cCCGca-CCA-CGGgc--UGGGGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 138048 0.66 0.524585
Target:  5'- cGGGCGggcaccacGGcuCCCGGCaaCGCgCCGCCa -3'
miRNA:   3'- -CCCGCa-------CCacGGGCUGggGCG-GGCGG- -5'
21519 5' -66.1 NC_004812.1 + 58507 0.66 0.524585
Target:  5'- gGGGCGacucGCCCcuguucuCCCCGCCC-CCg -3'
miRNA:   3'- -CCCGCaccaCGGGcu-----GGGGCGGGcGG- -5'
21519 5' -66.1 NC_004812.1 + 96041 0.66 0.524585
Target:  5'- -cGCG-GGUGCgCauGCUCCGCCgGCCc -3'
miRNA:   3'- ccCGCaCCACG-GgcUGGGGCGGgCGG- -5'
21519 5' -66.1 NC_004812.1 + 118105 0.66 0.524585
Target:  5'- cGGCGcGaccUCCGACCCCGggccuccgucCCCGCCa -3'
miRNA:   3'- cCCGCaCcacGGGCUGGGGC----------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 39332 0.66 0.524585
Target:  5'- -----cGGagGCcgCCGcCCCCGCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CG--GGCuGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 23431 0.66 0.524585
Target:  5'- uGGCGUccugGuGUGCCuggCGGCCgCGUuuGCCg -3'
miRNA:   3'- cCCGCA----C-CACGG---GCUGGgGCGggCGG- -5'
21519 5' -66.1 NC_004812.1 + 152405 0.66 0.524585
Target:  5'- -cGCGUGGgGCCgGGCgCCGCgggggCGCCc -3'
miRNA:   3'- ccCGCACCaCGGgCUGgGGCGg----GCGG- -5'
21519 5' -66.1 NC_004812.1 + 69533 0.66 0.524585
Target:  5'- cGGGUccGGccGCCCccccgcGCCCCuGCCCGCg -3'
miRNA:   3'- -CCCGcaCCa-CGGGc-----UGGGG-CGGGCGg -5'
21519 5' -66.1 NC_004812.1 + 137862 0.66 0.524585
Target:  5'- cGGaCGaGGUGCgCCGcgaguACCCCGCCguCGCg -3'
miRNA:   3'- cCC-GCaCCACG-GGC-----UGGGGCGG--GCGg -5'
21519 5' -66.1 NC_004812.1 + 8431 0.66 0.524585
Target:  5'- -----cGGagGCcgCCGcCCCCGCCCGCCg -3'
miRNA:   3'- cccgcaCCa-CG--GGCuGGGGCGGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 51609 0.66 0.524585
Target:  5'- gGGGCGcgaggGGcGCCgcggCGGCCCgCGgCCGCg -3'
miRNA:   3'- -CCCGCa----CCaCGG----GCUGGG-GCgGGCGg -5'
21519 5' -66.1 NC_004812.1 + 67629 0.66 0.524585
Target:  5'- aGGGcCGUGGccagggacgGCUgGGgcCCCUGgCCGCCg -3'
miRNA:   3'- -CCC-GCACCa--------CGGgCU--GGGGCgGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 149006 0.66 0.524585
Target:  5'- cGGCGcGaccUCCGACCCCGggccuccgucCCCGCCa -3'
miRNA:   3'- cCCGCaCcacGGGCUGGGGC----------GGGCGG- -5'
21519 5' -66.1 NC_004812.1 + 121504 0.66 0.524585
Target:  5'- -cGCGUGGgGCCgGGCgCCGCgggggCGCCc -3'
miRNA:   3'- ccCGCACCaCGGgCUGgGGCGg----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.