miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 3' -55.7 NC_004812.1 + 48181 0.66 0.942739
Target:  5'- aGGuGGccUCGGCgUCGAggGUCcgcgCCACGu -3'
miRNA:   3'- gCC-CC--AGCCGgAGCUuaUAGa---GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 69917 0.66 0.942739
Target:  5'- gCGGGGgugCGGCCggggCGuuc-UCUCCGg- -3'
miRNA:   3'- -GCCCCa--GCCGGa---GCuuauAGAGGUgc -5'
21524 3' -55.7 NC_004812.1 + 25837 0.66 0.942739
Target:  5'- -uGGGUCGccGCCUCGAAgaacgCCAUGa -3'
miRNA:   3'- gcCCCAGC--CGGAGCUUauagaGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 64150 0.66 0.942739
Target:  5'- uCGGGGaCGGCggcgCGGcgGgCUCCGCGc -3'
miRNA:   3'- -GCCCCaGCCGga--GCUuaUaGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 135080 0.66 0.938124
Target:  5'- gCGGGGgc-GCgCUCGGAgcccGUCUUCACGc -3'
miRNA:   3'- -GCCCCagcCG-GAGCUUa---UAGAGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 13327 0.66 0.938124
Target:  5'- gGGGGUCGGgggugCGGcgGUCccuUCCGCGc -3'
miRNA:   3'- gCCCCAGCCgga--GCUuaUAG---AGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 71514 0.66 0.938124
Target:  5'- aCGuGGGUgcggaCGGCCUCGGcgGcCUCCcugGCGu -3'
miRNA:   3'- -GC-CCCA-----GCCGGAGCUuaUaGAGG---UGC- -5'
21524 3' -55.7 NC_004812.1 + 13360 0.66 0.938124
Target:  5'- gGGGGUCGGgggugCGGcgGUCccuUCCGCGc -3'
miRNA:   3'- gCCCCAGCCgga--GCUuaUAG---AGGUGC- -5'
21524 3' -55.7 NC_004812.1 + 77981 0.66 0.938124
Target:  5'- -cGGGcCGGCCuUCGAGcg-CUCCAgGa -3'
miRNA:   3'- gcCCCaGCCGG-AGCUUauaGAGGUgC- -5'
21524 3' -55.7 NC_004812.1 + 95278 0.66 0.938124
Target:  5'- gGGGuGUgGGCCgCGGuggcUCUCCACc -3'
miRNA:   3'- gCCC-CAgCCGGaGCUuau-AGAGGUGc -5'
21524 3' -55.7 NC_004812.1 + 108306 0.66 0.935243
Target:  5'- gCGGcGUCGGCCUCcucggccaccgccgcGGccGUCUCCAgGg -3'
miRNA:   3'- -GCCcCAGCCGGAG---------------CUuaUAGAGGUgC- -5'
21524 3' -55.7 NC_004812.1 + 123898 0.66 0.933276
Target:  5'- aCGGGG-CGGCCcCGAc-GUCcgCCAUGc -3'
miRNA:   3'- -GCCCCaGCCGGaGCUuaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 154799 0.66 0.933276
Target:  5'- aCGGGG-CGGCCcCGAc-GUCcgCCAUGc -3'
miRNA:   3'- -GCCCCaGCCGGaGCUuaUAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 106225 0.66 0.933276
Target:  5'- aGGGGgcgacggCGGCgUCGAggcucGUGUCguaggUCACGa -3'
miRNA:   3'- gCCCCa------GCCGgAGCU-----UAUAGa----GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 14574 0.66 0.933276
Target:  5'- aGGGG-CaGGCCcgCGGGcGUCUCCAgCGc -3'
miRNA:   3'- gCCCCaG-CCGGa-GCUUaUAGAGGU-GC- -5'
21524 3' -55.7 NC_004812.1 + 38969 0.66 0.933276
Target:  5'- aCGGGcacGUCGGCCUCc-GUGUCggCCAg- -3'
miRNA:   3'- -GCCC---CAGCCGGAGcuUAUAGa-GGUgc -5'
21524 3' -55.7 NC_004812.1 + 70337 0.66 0.933276
Target:  5'- aGGGGUCGGCgagUCGGGggugCUUCGgCGg -3'
miRNA:   3'- gCCCCAGCCGg--AGCUUaua-GAGGU-GC- -5'
21524 3' -55.7 NC_004812.1 + 88011 0.66 0.932279
Target:  5'- gGGGGUCaGGuCCUCGAAccacacggcggcGUCccCCGCGg -3'
miRNA:   3'- gCCCCAG-CC-GGAGCUUa-----------UAGa-GGUGC- -5'
21524 3' -55.7 NC_004812.1 + 115543 0.66 0.928196
Target:  5'- aGGGGg-GGCCUCGAGagaCUCCcCu -3'
miRNA:   3'- gCCCCagCCGGAGCUUauaGAGGuGc -5'
21524 3' -55.7 NC_004812.1 + 32085 0.66 0.928196
Target:  5'- uGGGGccCGGCCcCGGAgGUCgCCugGu -3'
miRNA:   3'- gCCCCa-GCCGGaGCUUaUAGaGGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.