miRNA display CGI


Results 1 - 20 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21524 5' -59.2 NC_004812.1 + 144852 0.66 0.784565
Target:  5'- cGCGgGGAgAGCgUGCGGAGCcccacGGCc -3'
miRNA:   3'- aCGUgCCUgUCGaGCGUCUCGu----CCGc -5'
21524 5' -59.2 NC_004812.1 + 53319 0.66 0.784565
Target:  5'- gUGCACGGcaccguCAGCgugCGgGGGGC-GGCc -3'
miRNA:   3'- -ACGUGCCu-----GUCGa--GCgUCUCGuCCGc -5'
21524 5' -59.2 NC_004812.1 + 52298 0.66 0.784565
Target:  5'- gGuCACGGGgccCGGCcggCGuCGGGGUGGGCGg -3'
miRNA:   3'- aC-GUGCCU---GUCGa--GC-GUCUCGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 90009 0.66 0.784565
Target:  5'- gGCGUGGAgCGGCcCGCGG-GCcGGCGa -3'
miRNA:   3'- aCGUGCCU-GUCGaGCGUCuCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 32655 0.66 0.784565
Target:  5'- aGCcccccCGGGCugGGCUCGCgcgGGAGgAGGCc -3'
miRNA:   3'- aCGu----GCCUG--UCGAGCG---UCUCgUCCGc -5'
21524 5' -59.2 NC_004812.1 + 16643 0.66 0.784565
Target:  5'- gGCGUGGGCGGCcagGCuGAGCAGGa- -3'
miRNA:   3'- aCGUGCCUGUCGag-CGuCUCGUCCgc -5'
21524 5' -59.2 NC_004812.1 + 26549 0.66 0.784565
Target:  5'- cGUGCGGACgGGUUgGCGuGGCacAGGCGg -3'
miRNA:   3'- aCGUGCCUG-UCGAgCGUcUCG--UCCGC- -5'
21524 5' -59.2 NC_004812.1 + 111716 0.66 0.784565
Target:  5'- gGcCACGGGCgAGCUCGCGuu-CGGGUGc -3'
miRNA:   3'- aC-GUGCCUG-UCGAGCGUcucGUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 121639 0.66 0.781836
Target:  5'- gGCGCGGccggcggaggaggaGCGGCcUGCGGcGgAGGCGg -3'
miRNA:   3'- aCGUGCC--------------UGUCGaGCGUCuCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 152540 0.66 0.781836
Target:  5'- gGCGCGGccggcggaggaggaGCGGCcUGCGGcGgAGGCGg -3'
miRNA:   3'- aCGUGCC--------------UGUCGaGCGUCuCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 25675 0.66 0.779096
Target:  5'- gGCcCGGGC-GCUguccccgccgucgucCGCGGGGCcGGCGa -3'
miRNA:   3'- aCGuGCCUGuCGA---------------GCGUCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 45429 0.66 0.779096
Target:  5'- gGCGCGGugGccaccgucagguucaGCUcCGCcGGGgGGGCGa -3'
miRNA:   3'- aCGUGCCugU---------------CGA-GCGuCUCgUCCGC- -5'
21524 5' -59.2 NC_004812.1 + 151183 0.66 0.779096
Target:  5'- gGCcCGGGC-GCUguccccgccgucgucCGCGGGGCcGGCGa -3'
miRNA:   3'- aCGuGCCUGuCGA---------------GCGUCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 11578 0.66 0.779096
Target:  5'- cGCugGGGCAccgggggggagggacGC-CGCGcGAGCAGGg- -3'
miRNA:   3'- aCGugCCUGU---------------CGaGCGU-CUCGUCCgc -5'
21524 5' -59.2 NC_004812.1 + 3370 0.66 0.775425
Target:  5'- cGCGCGGggcGCAGUagGCcucgAGGGC-GGCGg -3'
miRNA:   3'- aCGUGCC---UGUCGagCG----UCUCGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 83934 0.66 0.775425
Target:  5'- gGCGCGGACGuuCUCGCcGGGCucgccGCGg -3'
miRNA:   3'- aCGUGCCUGUc-GAGCGuCUCGuc---CGC- -5'
21524 5' -59.2 NC_004812.1 + 98766 0.66 0.775425
Target:  5'- aGCGCGG-CGGCg-GC-GAGUGGGCc -3'
miRNA:   3'- aCGUGCCuGUCGagCGuCUCGUCCGc -5'
21524 5' -59.2 NC_004812.1 + 25404 0.66 0.775425
Target:  5'- gGCGCGGcacuuCAcCUCGUAGAaccGCAGGgGg -3'
miRNA:   3'- aCGUGCCu----GUcGAGCGUCU---CGUCCgC- -5'
21524 5' -59.2 NC_004812.1 + 93593 0.66 0.775425
Target:  5'- aGCGCGc---GCUCGCGGAcGC-GGCGg -3'
miRNA:   3'- aCGUGCcuguCGAGCGUCU-CGuCCGC- -5'
21524 5' -59.2 NC_004812.1 + 127904 0.66 0.775425
Target:  5'- gGCGCgGGGCGGCggUCGCgaaauccaggaAGGGCAcGCGa -3'
miRNA:   3'- aCGUG-CCUGUCG--AGCG-----------UCUCGUcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.