miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 3' -58.5 NC_004812.1 + 22175 0.66 0.821185
Target:  5'- --cGcCGUGCGGaUCgGCGgAGCGCCGg -3'
miRNA:   3'- gaaCaGCGCGUCgAG-CGCgUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 8315 0.66 0.821185
Target:  5'- -----aGCGCAGCagCGgGcCGGCGCCGc -3'
miRNA:   3'- gaacagCGCGUCGa-GCgC-GUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 11188 0.66 0.821185
Target:  5'- ---cUCGCGCaAGC-CGCGCAaGUACUa -3'
miRNA:   3'- gaacAGCGCG-UCGaGCGCGU-CGUGGc -5'
21529 3' -58.5 NC_004812.1 + 33696 0.66 0.821185
Target:  5'- -gUGggCGUGCaggccaacGGCUCGUaCAGCACCa -3'
miRNA:   3'- gaACa-GCGCG--------UCGAGCGcGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 130305 0.66 0.821185
Target:  5'- --cGUCGCgGUAGCggGCGUagaaGGCGCCc -3'
miRNA:   3'- gaaCAGCG-CGUCGagCGCG----UCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 140957 0.66 0.821185
Target:  5'- --cG-CGgGCGuGCUCGCGgAGCGCgCGa -3'
miRNA:   3'- gaaCaGCgCGU-CGAGCGCgUCGUG-GC- -5'
21529 3' -58.5 NC_004812.1 + 144725 0.66 0.821185
Target:  5'- --gGUCGCGCAcg-UGCGCGGCGUCa -3'
miRNA:   3'- gaaCAGCGCGUcgaGCGCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 2795 0.66 0.821185
Target:  5'- -gUGggCGUGCaggccaacGGCUCGUaCAGCACCa -3'
miRNA:   3'- gaACa-GCGCG--------UCGAGCGcGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 25805 0.66 0.821185
Target:  5'- ---cUCGCGgAGCUCGCcgaGGuCGCCGa -3'
miRNA:   3'- gaacAGCGCgUCGAGCGcg-UC-GUGGC- -5'
21529 3' -58.5 NC_004812.1 + 83740 0.66 0.821185
Target:  5'- -cUGgcgGCGCAGCUgccCGCGCuguccGCGCUGa -3'
miRNA:   3'- gaACag-CGCGUCGA---GCGCGu----CGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 116323 0.66 0.821185
Target:  5'- gUUGUCGCcCuGCUgGCGgCGGCGCa- -3'
miRNA:   3'- gAACAGCGcGuCGAgCGC-GUCGUGgc -5'
21529 3' -58.5 NC_004812.1 + 4797 0.66 0.821185
Target:  5'- --cGUCGCgGUAGCggGCGUagaaGGCGCCc -3'
miRNA:   3'- gaaCAGCG-CGUCGagCGCG----UCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 39216 0.66 0.821185
Target:  5'- -----aGCGCAGCagCGgGcCGGCGCCGc -3'
miRNA:   3'- gaacagCGCGUCGa-GCgC-GUCGUGGC- -5'
21529 3' -58.5 NC_004812.1 + 39395 0.66 0.821185
Target:  5'- -aUGgCcCGCAGCUgGCGguGCguGCCGa -3'
miRNA:   3'- gaACaGcGCGUCGAgCGCguCG--UGGC- -5'
21529 3' -58.5 NC_004812.1 + 76284 0.66 0.821185
Target:  5'- --cGgcgCGCGCGGC-CGCcuccaGCAGCGCgGc -3'
miRNA:   3'- gaaCa--GCGCGUCGaGCG-----CGUCGUGgC- -5'
21529 3' -58.5 NC_004812.1 + 106888 0.66 0.821185
Target:  5'- ---aUCGCGCAGCugcugaUCGCGgGGU-CCGa -3'
miRNA:   3'- gaacAGCGCGUCG------AGCGCgUCGuGGC- -5'
21529 3' -58.5 NC_004812.1 + 151313 0.66 0.821185
Target:  5'- ---cUCGCGgAGCUCGCcgaGGuCGCCGa -3'
miRNA:   3'- gaacAGCGCgUCGAGCGcg-UC-GUGGC- -5'
21529 3' -58.5 NC_004812.1 + 153487 0.66 0.816091
Target:  5'- ----aCGCGCcgcugcccggcgaggAGCUCG-GCGGCGCCu -3'
miRNA:   3'- gaacaGCGCG---------------UCGAGCgCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 27978 0.66 0.816091
Target:  5'- ----aCGCGCcgcugcccggcgaggAGCUCG-GCGGCGCCu -3'
miRNA:   3'- gaacaGCGCG---------------UCGAGCgCGUCGUGGc -5'
21529 3' -58.5 NC_004812.1 + 45626 0.66 0.812663
Target:  5'- --gGUCGCGCGGCUguuccgccCGUGCuugaACCGc -3'
miRNA:   3'- gaaCAGCGCGUCGA--------GCGCGucg-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.