miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21529 5' -53.1 NC_004812.1 + 26334 0.66 0.979493
Target:  5'- cGCCAgCGGCgagCCGUGGcCcGGCGCc- -3'
miRNA:   3'- -CGGUgGUUGa--GGCACUuGaCUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 153117 0.66 0.979493
Target:  5'- cGCCGCC----CCGgGGGCgGGCGCGGg -3'
miRNA:   3'- -CGGUGGuugaGGCaCUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 151842 0.66 0.979493
Target:  5'- cGCCAgCGGCgagCCGUGGcCcGGCGCc- -3'
miRNA:   3'- -CGGUgGUUGa--GGCACUuGaCUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 11967 0.66 0.979493
Target:  5'- uGCCGCaGACUCCccgGGACgcgaUGGCGCGc -3'
miRNA:   3'- -CGGUGgUUGAGGca-CUUG----ACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 147790 0.66 0.979493
Target:  5'- gGCUGCCGagGCUCuCG-GGGCUGGCG-AGg -3'
miRNA:   3'- -CGGUGGU--UGAG-GCaCUUGACUGCgUC- -5'
21529 5' -53.1 NC_004812.1 + 21623 0.66 0.979493
Target:  5'- -aCACCAugUCCGgcccguaguucaUGGGCuUGACGUAc -3'
miRNA:   3'- cgGUGGUugAGGC------------ACUUG-ACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 122216 0.66 0.979493
Target:  5'- cGCCGCC----CCGgGGGCgGGCGCGGg -3'
miRNA:   3'- -CGGUGGuugaGGCaCUUGaCUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 43309 0.66 0.979493
Target:  5'- gGCCACgAACUgCGUGccgccgaagGGCUGGUGCAu -3'
miRNA:   3'- -CGGUGgUUGAgGCAC---------UUGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 142333 0.66 0.979493
Target:  5'- aCCugCAGCgCCGgGAcCUGACGUAc -3'
miRNA:   3'- cGGugGUUGaGGCaCUuGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 116996 0.66 0.977149
Target:  5'- -gCACCAAgUUCCccGAGCUGGCGUAc -3'
miRNA:   3'- cgGUGGUU-GAGGcaCUUGACUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 54815 0.66 0.977149
Target:  5'- uGCCGuCCGACcuguuUCUGgccGAGCUGACGUu- -3'
miRNA:   3'- -CGGU-GGUUG-----AGGCa--CUUGACUGCGuc -5'
21529 5' -53.1 NC_004812.1 + 114606 0.66 0.977149
Target:  5'- cGCCAUCGAC-CCGgcgaugGGGC--GCGCGGa -3'
miRNA:   3'- -CGGUGGUUGaGGCa-----CUUGacUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 100457 0.66 0.977149
Target:  5'- cGCCAUCAGCgagCUGcGGuucugGCUGGCGuCGGg -3'
miRNA:   3'- -CGGUGGUUGa--GGCaCU-----UGACUGC-GUC- -5'
21529 5' -53.1 NC_004812.1 + 25369 0.66 0.977149
Target:  5'- gGCuCGCCGGCgUCCGcgGGAUcgaacgcguacuUGGCGCGGc -3'
miRNA:   3'- -CG-GUGGUUG-AGGCa-CUUG------------ACUGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 18710 0.66 0.977149
Target:  5'- aGCCGCagUAGCUCCGcgGcGCUGGgGCGc -3'
miRNA:   3'- -CGGUG--GUUGAGGCa-CuUGACUgCGUc -5'
21529 5' -53.1 NC_004812.1 + 128041 0.66 0.977149
Target:  5'- uCCGCCAGCUgCCGgccGAACau-CGCGGc -3'
miRNA:   3'- cGGUGGUUGA-GGCa--CUUGacuGCGUC- -5'
21529 5' -53.1 NC_004812.1 + 137476 0.66 0.976905
Target:  5'- cGCCGCCuGCUUCGcgcgGGGCUccuggucaaccccGGCGCAc -3'
miRNA:   3'- -CGGUGGuUGAGGCa---CUUGA-------------CUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 26407 0.66 0.976409
Target:  5'- aGCCGCCcggGGCUCUggggcgcgccggagGUGGACgaGGCGCGc -3'
miRNA:   3'- -CGGUGG---UUGAGG--------------CACUUGa-CUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 151915 0.66 0.976409
Target:  5'- aGCCGCCcggGGCUCUggggcgcgccggagGUGGACgaGGCGCGc -3'
miRNA:   3'- -CGGUGG---UUGAGG--------------CACUUGa-CUGCGUc -5'
21529 5' -53.1 NC_004812.1 + 75728 0.66 0.974877
Target:  5'- cGCCAgCGGCUCCGUGuccacccggaacauCUcGGCGUAc -3'
miRNA:   3'- -CGGUgGUUGAGGCACuu------------GA-CUGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.