miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21531 5' -62.4 NC_004812.1 + 34037 0.66 0.689182
Target:  5'- -gGUGU-CGcGGcCGCCgCGCUCCCCu -3'
miRNA:   3'- gaCACAgGCuCCuGCGGgGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 3136 0.66 0.689181
Target:  5'- -gGUGU-CGcGGcCGCCgCGCUCCCCu -3'
miRNA:   3'- gaCACAgGCuCCuGCGGgGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 62349 0.66 0.689181
Target:  5'- ------aCGAGGACGCCCCGCCg--- -3'
miRNA:   3'- gacacagGCUCCUGCGGGGUGGgggg -5'
21531 5' -62.4 NC_004812.1 + 103266 0.66 0.689181
Target:  5'- -aGgcgCgCGGGGGCGacggCCGCCCCCCg -3'
miRNA:   3'- gaCacaG-GCUCCUGCgg--GGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 10822 0.66 0.688224
Target:  5'- ---aGcCCGAGG-CGCUCgcgcugcuuccggCACCCCCCc -3'
miRNA:   3'- gacaCaGGCUCCuGCGGG-------------GUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 59408 0.66 0.68631
Target:  5'- -cGUGgcaCCGccAGGAUgaGCCCCGCcaggacgacgacgaCCCCCa -3'
miRNA:   3'- gaCACa--GGC--UCCUG--CGGGGUG--------------GGGGG- -5'
21531 5' -62.4 NC_004812.1 + 96967 0.66 0.685352
Target:  5'- ---cGUCCGucucaucccccgcGGccgcuccCGCCCCACCCCCa -3'
miRNA:   3'- gacaCAGGCu------------CCu------GCGGGGUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 74451 0.66 0.683435
Target:  5'- -cGUGUacggccagaCCGAGugggacaucacccccGugGCaCCCGCCaCCCCg -3'
miRNA:   3'- gaCACA---------GGCUC---------------CugCG-GGGUGG-GGGG- -5'
21531 5' -62.4 NC_004812.1 + 99180 0.66 0.679597
Target:  5'- aCUGcaUGgaccCCGuGGugcCGCCCgGCCCCCg -3'
miRNA:   3'- -GAC--ACa---GGCuCCu--GCGGGgUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 3506 0.66 0.679597
Target:  5'- -----cCCGGGGcgGCGCCCagacaGCCCgCCCa -3'
miRNA:   3'- gacacaGGCUCC--UGCGGGg----UGGG-GGG- -5'
21531 5' -62.4 NC_004812.1 + 68600 0.66 0.679597
Target:  5'- gUGUgGUUCGAGGA--CCUgACCCCCg -3'
miRNA:   3'- gACA-CAGGCUCCUgcGGGgUGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 34407 0.66 0.679597
Target:  5'- -----cCCGGGGcgGCGCCCagacaGCCCgCCCa -3'
miRNA:   3'- gacacaGGCUCC--UGCGGGg----UGGG-GGG- -5'
21531 5' -62.4 NC_004812.1 + 100885 0.66 0.679597
Target:  5'- -------gGAGGGCGCCgCGgCCCCCg -3'
miRNA:   3'- gacacaggCUCCUGCGGgGUgGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 50038 0.66 0.679597
Target:  5'- uCUGcGcCCGGcccGGGCGCCUCcucccucaGCUCCCCg -3'
miRNA:   3'- -GACaCaGGCU---CCUGCGGGG--------UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 68874 0.66 0.679597
Target:  5'- ---gGUCCGcGGccccgGCGCCcgcgCCGCCUCCCg -3'
miRNA:   3'- gacaCAGGCuCC-----UGCGG----GGUGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 137797 0.66 0.678637
Target:  5'- uCUGgcgGgcggCGAGGGCGCCgCggagcagGCCCCCUg -3'
miRNA:   3'- -GACa--Cag--GCUCCUGCGGgG-------UGGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 116142 0.66 0.673829
Target:  5'- -gGUGUauuaCGGGGAgacgggccgcccguaCGCCCCGCUCUgCg -3'
miRNA:   3'- gaCACAg---GCUCCU---------------GCGGGGUGGGGgG- -5'
21531 5' -62.4 NC_004812.1 + 127963 0.66 0.669978
Target:  5'- ---aGUCCGGcGGGCGCgUCggagGCCCCCa -3'
miRNA:   3'- gacaCAGGCU-CCUGCGgGG----UGGGGGg -5'
21531 5' -62.4 NC_004812.1 + 128676 0.66 0.669978
Target:  5'- -gGUGgccggcggucuUCCGggaggcGGGGCGCCCgGuCUCCCCg -3'
miRNA:   3'- gaCAC-----------AGGC------UCCUGCGGGgU-GGGGGG- -5'
21531 5' -62.4 NC_004812.1 + 129914 0.66 0.669978
Target:  5'- -cGUGgaUCCGucGccgccuacGCaGCCCCGCCCUCCa -3'
miRNA:   3'- gaCAC--AGGCucC--------UG-CGGGGUGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.