miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21545 3' -57.3 NC_004812.1 + 47149 0.65 0.877021
Target:  5'- ---cGCUGCAGGGCCGCUcgauuuuccaggccGCgCGGg- -3'
miRNA:   3'- agauCGGCGUCUUGGCGA--------------UGgGCCac -5'
21545 3' -57.3 NC_004812.1 + 32071 0.66 0.87199
Target:  5'- ---cGUCGCGGGGcCCGUgggGCCCGGc- -3'
miRNA:   3'- agauCGGCGUCUU-GGCGa--UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 68319 0.66 0.87199
Target:  5'- gCUcGCCGCAGAGCgccuCGUUaagagccaggagGCCCGGg- -3'
miRNA:   3'- aGAuCGGCGUCUUG----GCGA------------UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 29210 0.66 0.87199
Target:  5'- uUCUcGCCGCGG---UGCUGCUCGGg- -3'
miRNA:   3'- -AGAuCGGCGUCuugGCGAUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 151845 0.66 0.87199
Target:  5'- --cAGCgGC-GAGCCGUgGCCCGGc- -3'
miRNA:   3'- agaUCGgCGuCUUGGCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 19676 0.66 0.87199
Target:  5'- --gGGCCGCGGGGaCGagggcgGCCCGGUc -3'
miRNA:   3'- agaUCGGCGUCUUgGCga----UGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 79012 0.66 0.87199
Target:  5'- gCUGGCCGgGGAcgcCCGCgacCgCCGGUa -3'
miRNA:   3'- aGAUCGGCgUCUu--GGCGau-G-GGCCAc -5'
21545 3' -57.3 NC_004812.1 + 26337 0.66 0.87199
Target:  5'- --cAGCgGC-GAGCCGUgGCCCGGc- -3'
miRNA:   3'- agaUCGgCGuCUUGGCGaUGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 145445 0.66 0.87199
Target:  5'- --aGGCgaugaccgCGCGGAGCUGCUcgcguACCCGaGUGg -3'
miRNA:   3'- agaUCG--------GCGUCUUGGCGA-----UGGGC-CAC- -5'
21545 3' -57.3 NC_004812.1 + 19606 0.66 0.87199
Target:  5'- --cAGCCGCGgcGAAUCGCUcgcgccgccuCCCGGUc -3'
miRNA:   3'- agaUCGGCGU--CUUGGCGAu---------GGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 75814 0.66 0.87199
Target:  5'- --cGGCCGC-GAGCgGCggcagcGCCgGGUGg -3'
miRNA:   3'- agaUCGGCGuCUUGgCGa-----UGGgCCAC- -5'
21545 3' -57.3 NC_004812.1 + 136733 0.66 0.869802
Target:  5'- ---cGCCGCcGcGCCGCUggagacgcucaacgACCCGGUu -3'
miRNA:   3'- agauCGGCGuCuUGGCGA--------------UGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 140020 0.66 0.864624
Target:  5'- ---uGCUGCGGcccuGCCGCccgcggGCCCGGUc -3'
miRNA:   3'- agauCGGCGUCu---UGGCGa-----UGGGCCAc -5'
21545 3' -57.3 NC_004812.1 + 84705 0.66 0.864624
Target:  5'- ---cGcCCGCGGcGCCGCgccGCCCGGc- -3'
miRNA:   3'- agauC-GGCGUCuUGGCGa--UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 126527 0.66 0.864624
Target:  5'- --gGGCCGCGcccCCGCgaggGCCCGGc- -3'
miRNA:   3'- agaUCGGCGUcuuGGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 58091 0.66 0.864624
Target:  5'- gCUcGUCGcCGGGGCCGCccgggACCCGGc- -3'
miRNA:   3'- aGAuCGGC-GUCUUGGCGa----UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 1018 0.66 0.864624
Target:  5'- --gGGCCGCGcccCCGCgaggGCCCGGc- -3'
miRNA:   3'- agaUCGGCGUcuuGGCGa---UGGGCCac -5'
21545 3' -57.3 NC_004812.1 + 154405 0.66 0.864624
Target:  5'- --gGGCCGCGGcGACaCGCUGCUCGc-- -3'
miRNA:   3'- agaUCGGCGUC-UUG-GCGAUGGGCcac -5'
21545 3' -57.3 NC_004812.1 + 111409 0.66 0.864624
Target:  5'- --cGGCCGCGcuGCUGCgcuCCCGGg- -3'
miRNA:   3'- agaUCGGCGUcuUGGCGau-GGGCCac -5'
21545 3' -57.3 NC_004812.1 + 28897 0.66 0.864624
Target:  5'- --gGGCCGCGGcGACaCGCUGCUCGc-- -3'
miRNA:   3'- agaUCGGCGUC-UUG-GCGAUGGGCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.