miRNA display CGI


Results 1 - 20 of 612 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 3' -58.3 NC_004812.1 + 63786 0.66 0.870393
Target:  5'- --gGCCGGGG-UACugGccGGCGCg- -3'
miRNA:   3'- ccaCGGCCCCuGUGugCuuCUGCGgc -5'
21547 3' -58.3 NC_004812.1 + 140622 0.66 0.870393
Target:  5'- --gGCgCGGGGcCGCGgGGucGGCGCCGc -3'
miRNA:   3'- ccaCG-GCCCCuGUGUgCUu-CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 101559 0.66 0.870393
Target:  5'- aGGUuaaagGCCccguGGGGGCACGgGuacAGGcACGCCGg -3'
miRNA:   3'- -CCA-----CGG----CCCCUGUGUgC---UUC-UGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 68572 0.66 0.870393
Target:  5'- --cGCgGacGGGAC-CGCgGggGACGCCGc -3'
miRNA:   3'- ccaCGgC--CCCUGuGUG-CuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 44730 0.66 0.870393
Target:  5'- gGGUcCCGGGa--GCACGAGGGgcucguucauCGCCGg -3'
miRNA:   3'- -CCAcGGCCCcugUGUGCUUCU----------GCGGC- -5'
21547 3' -58.3 NC_004812.1 + 65506 0.66 0.870393
Target:  5'- cGGggGCgaGGGGACgGCGCGccccuGGCGCCc -3'
miRNA:   3'- -CCa-CGg-CCCCUG-UGUGCuu---CUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 31890 0.66 0.870393
Target:  5'- gGGUcGCCGGGGGuC-CugGggGuccgggguCGCCc -3'
miRNA:   3'- -CCA-CGGCCCCU-GuGugCuuCu-------GCGGc -5'
21547 3' -58.3 NC_004812.1 + 114689 0.66 0.870393
Target:  5'- gGGgcgGCCGcGGGACcggaauGCcguCGAAGAgGCCc -3'
miRNA:   3'- -CCa--CGGC-CCCUG------UGu--GCUUCUgCGGc -5'
21547 3' -58.3 NC_004812.1 + 33388 0.66 0.869678
Target:  5'- -aUGCCGcGGGucgugacGCACACGAAcgcGACgGCCu -3'
miRNA:   3'- ccACGGC-CCC-------UGUGUGCUU---CUG-CGGc -5'
21547 3' -58.3 NC_004812.1 + 23636 0.66 0.868961
Target:  5'- --cGCCGGGGcGCGCgguccccGCGGAGGCGaggggcggcguccCCGg -3'
miRNA:   3'- ccaCGGCCCC-UGUG-------UGCUUCUGC-------------GGC- -5'
21547 3' -58.3 NC_004812.1 + 149144 0.66 0.868961
Target:  5'- --cGCCGGGGcGCGCgguccccGCGGAGGCGaggggcggcguccCCGg -3'
miRNA:   3'- ccaCGGCCCC-UGUG-------UGCUUCUGC-------------GGC- -5'
21547 3' -58.3 NC_004812.1 + 30111 0.66 0.868243
Target:  5'- uGGgGCUGcGGGGCGCACGucccgcagcccccgGGGugGuuGg -3'
miRNA:   3'- -CCaCGGC-CCCUGUGUGC--------------UUCugCggC- -5'
21547 3' -58.3 NC_004812.1 + 101033 0.66 0.868243
Target:  5'- --cGCCucGGGGuGCACGCGGgccagcagggccccGGugGCCa -3'
miRNA:   3'- ccaCGG--CCCC-UGUGUGCU--------------UCugCGGc -5'
21547 3' -58.3 NC_004812.1 + 105711 0.66 0.868243
Target:  5'- cGGgGCCGGGGccccgaacaccgggGC-CGgGggGugGCCc -3'
miRNA:   3'- -CCaCGGCCCC--------------UGuGUgCuuCugCGGc -5'
21547 3' -58.3 NC_004812.1 + 137414 0.66 0.866075
Target:  5'- cGUGCUGGGuuuuccgggaugggcGACGCugaagguuucUGggGGCGCCGc -3'
miRNA:   3'- cCACGGCCC---------------CUGUGu---------GCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 130256 0.66 0.863156
Target:  5'- ---cCCGGGGGCG-GCGGcucGGCGCCGg -3'
miRNA:   3'- ccacGGCCCCUGUgUGCUu--CUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 123820 0.66 0.863156
Target:  5'- gGGUGCCGcGGGCGgGgCccGGGCGCCc -3'
miRNA:   3'- -CCACGGCcCCUGUgU-GcuUCUGCGGc -5'
21547 3' -58.3 NC_004812.1 + 74060 0.66 0.863156
Target:  5'- cGGgcgGCagCGGcGGGCGCGCGcGGGcCGCCu -3'
miRNA:   3'- -CCa--CG--GCC-CCUGUGUGCuUCU-GCGGc -5'
21547 3' -58.3 NC_004812.1 + 98389 0.66 0.863156
Target:  5'- cGGgcgGCgCGGcGGcCGCGgGgcGGCGCCGc -3'
miRNA:   3'- -CCa--CG-GCC-CCuGUGUgCuuCUGCGGC- -5'
21547 3' -58.3 NC_004812.1 + 36899 0.66 0.863156
Target:  5'- aGG-GUCGGGGGgACGagGggGACgguGCCGc -3'
miRNA:   3'- -CCaCGGCCCCUgUGUg-CuuCUG---CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.