miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21547 5' -54.9 NC_004812.1 + 36888 0.66 0.945263
Target:  5'- gGUUGGCGCCgagggucgGggggacgagggggacGGUGCCgcCAgcUCCCGCa -3'
miRNA:   3'- -CAGCCGCGGaa------U---------------UUACGG--GU--AGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 101992 0.66 0.943458
Target:  5'- -gCGG-GCCUcuccgGCCCcgCCCGUc -3'
miRNA:   3'- caGCCgCGGAauuuaCGGGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 100169 0.66 0.943458
Target:  5'- aUC-GCGCCgccag-GCCCGccgCCCGCc -3'
miRNA:   3'- cAGcCGCGGaauuuaCGGGUa--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 16712 0.66 0.943458
Target:  5'- -gCGaGCGaCCgcggg-GCCgGUCCCGCu -3'
miRNA:   3'- caGC-CGC-GGaauuuaCGGgUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 130341 0.66 0.943458
Target:  5'- cGUCGGCGUCcaggg-GCaCggCCCGCg -3'
miRNA:   3'- -CAGCCGCGGaauuuaCGgGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 32264 0.66 0.943458
Target:  5'- -cCGGCuaugcaaacGCCgugcgcGAcgGCCCGcCCCGCg -3'
miRNA:   3'- caGCCG---------CGGaa----UUuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 51408 0.66 0.943458
Target:  5'- -cCGGCGCgCUc----GCCCAccaCCCGCc -3'
miRNA:   3'- caGCCGCG-GAauuuaCGGGUa--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 121717 0.66 0.943458
Target:  5'- -gCGGCGgCgagagcAGGUGCCCGggCCgGCg -3'
miRNA:   3'- caGCCGCgGaa----UUUACGGGUa-GGgCG- -5'
21547 5' -54.9 NC_004812.1 + 107335 0.66 0.943458
Target:  5'- -gCGGuCGCCUUGuGUGUCgAUUCgGCc -3'
miRNA:   3'- caGCC-GCGGAAUuUACGGgUAGGgCG- -5'
21547 5' -54.9 NC_004812.1 + 41260 0.66 0.943458
Target:  5'- uUCGGUGUU-----UGCCCGccCCCGCu -3'
miRNA:   3'- cAGCCGCGGaauuuACGGGUa-GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 1363 0.66 0.943458
Target:  5'- -cCGGCuaugcaaacGCCgugcgcGAcgGCCCGcCCCGCg -3'
miRNA:   3'- caGCCG---------CGGaa----UUuaCGGGUaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 19536 0.66 0.943458
Target:  5'- -gCGGCGCCggugucGAUGCggaCCGUCagcgaCGCg -3'
miRNA:   3'- caGCCGCGGaau---UUACG---GGUAGg----GCG- -5'
21547 5' -54.9 NC_004812.1 + 4833 0.66 0.943458
Target:  5'- cGUCGGCGUCcaggg-GCaCggCCCGCg -3'
miRNA:   3'- -CAGCCGCGGaauuuaCGgGuaGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 152618 0.66 0.943458
Target:  5'- -gCGGCGgCgagagcAGGUGCCCGggCCgGCg -3'
miRNA:   3'- caGCCGCgGaa----UUUACGGGUa-GGgCG- -5'
21547 5' -54.9 NC_004812.1 + 32708 0.66 0.943001
Target:  5'- --gGGCGCCagcaccucccccaGCgCGUCCCGCg -3'
miRNA:   3'- cagCCGCGGaauuua-------CGgGUAGGGCG- -5'
21547 5' -54.9 NC_004812.1 + 44583 0.66 0.943001
Target:  5'- cUCGGCGUaggcccgcgacagguGGUGCUCGUggCCCGCg -3'
miRNA:   3'- cAGCCGCGgaau-----------UUACGGGUA--GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 8517 0.66 0.938779
Target:  5'- -cCGGCuGCCUUuuAUcCCgGUCgCCGCg -3'
miRNA:   3'- caGCCG-CGGAAuuUAcGGgUAG-GGCG- -5'
21547 5' -54.9 NC_004812.1 + 6191 0.66 0.938779
Target:  5'- -gCGGagGCCcgGGGcGCCCGgcggCCCGCg -3'
miRNA:   3'- caGCCg-CGGaaUUUaCGGGUa---GGGCG- -5'
21547 5' -54.9 NC_004812.1 + 83608 0.66 0.938779
Target:  5'- --gGGCGCCagUGGGUGCgCgCAUCCacaaCGCg -3'
miRNA:   3'- cagCCGCGGa-AUUUACG-G-GUAGG----GCG- -5'
21547 5' -54.9 NC_004812.1 + 94676 0.66 0.938779
Target:  5'- -aCGGCGCg--GGAU-CCCGagCCCGCg -3'
miRNA:   3'- caGCCGCGgaaUUUAcGGGUa-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.