miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 116596 0.66 0.899265
Target:  5'- gCCCGCCgcgGGCcgccGCGucUGuCGCGGCC-GCUCg -3'
miRNA:   3'- -GGGUGG---UCG----UGU--AC-GUGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 148907 0.66 0.899265
Target:  5'- cCCCGCCGcGgACucgGCGCGACCcccGCg- -3'
miRNA:   3'- -GGGUGGU-CgUGua-CGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 53723 0.66 0.899265
Target:  5'- gUCCGCCGccccGCGCAcggacgugagccUGgGCGACgaGCUCc -3'
miRNA:   3'- -GGGUGGU----CGUGU------------ACgUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 60847 0.66 0.899265
Target:  5'- cUCCACgGGCucggUGUGCGCGGCCgccGCg- -3'
miRNA:   3'- -GGGUGgUCGu---GUACGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 136693 0.66 0.899265
Target:  5'- gCCGCCGGCGCGguggcggcgGCGCGGgCcGC-Cg -3'
miRNA:   3'- gGGUGGUCGUGUa--------CGUGCUgGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 50100 0.66 0.899265
Target:  5'- gCCGCCGGCGCcccGCGCcgcgGACCcGCg- -3'
miRNA:   3'- gGGUGGUCGUGua-CGUG----CUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 76971 0.66 0.899265
Target:  5'- uCCCGCCGGgccggggcCGCcgGcCACGGCCgccCUCa -3'
miRNA:   3'- -GGGUGGUC--------GUGuaC-GUGCUGGac-GAG- -5'
21551 5' -56.5 NC_004812.1 + 63622 0.66 0.899265
Target:  5'- gUCCugCGGCAgCA-GCACGacgaaacucGCCaGCUCg -3'
miRNA:   3'- -GGGugGUCGU-GUaCGUGC---------UGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 105193 0.66 0.899265
Target:  5'- gCCUGCgAGCGCGgggcgcggGCGCGgGCCccggGCUCu -3'
miRNA:   3'- -GGGUGgUCGUGUa-------CGUGC-UGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 79093 0.66 0.899265
Target:  5'- gCCCGCCuuugacgcGCACGUGCAggaagUGGCCcGC-Cg -3'
miRNA:   3'- -GGGUGGu-------CGUGUACGU-----GCUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 69442 0.66 0.899265
Target:  5'- gCCgCACgCGGCGCAUccucugucGCGCGGCCgaGCa- -3'
miRNA:   3'- -GG-GUG-GUCGUGUA--------CGUGCUGGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 69908 0.66 0.899265
Target:  5'- cUCCACCccgAGCGCAUccaggcGCugGGgCUGCg- -3'
miRNA:   3'- -GGGUGG---UCGUGUA------CGugCUgGACGag -5'
21551 5' -56.5 NC_004812.1 + 60846 0.66 0.899265
Target:  5'- gCUCGCagaGGCGCGUcagguucggggcGCGCGGCUggGCUCc -3'
miRNA:   3'- -GGGUGg--UCGUGUA------------CGUGCUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 26922 0.66 0.899265
Target:  5'- uCCCGCCgGGUACG-GCGCcGCggGCUCa -3'
miRNA:   3'- -GGGUGG-UCGUGUaCGUGcUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 81175 0.66 0.899265
Target:  5'- aCC-CCGGCACGUGCucccccgccaGCaGCCUGgaCg -3'
miRNA:   3'- gGGuGGUCGUGUACG----------UGcUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 118006 0.66 0.899265
Target:  5'- cCCCGCCGcGgACucgGCGCGACCcccGCg- -3'
miRNA:   3'- -GGGUGGU-CgUGua-CGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 45201 0.66 0.899265
Target:  5'- gCCCGggAGCGCAgcaGCGCGGCC-GCg- -3'
miRNA:   3'- -GGGUggUCGUGUa--CGUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 49194 0.66 0.899265
Target:  5'- aCCGCCuGCA---GCugGGCaUGCUCa -3'
miRNA:   3'- gGGUGGuCGUguaCGugCUGgACGAG- -5'
21551 5' -56.5 NC_004812.1 + 110940 0.66 0.899265
Target:  5'- uCCCGggggggcuuCCAGCACggGCuguCGuGCCUGCg- -3'
miRNA:   3'- -GGGU---------GGUCGUGuaCGu--GC-UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 111078 0.66 0.897324
Target:  5'- uUCGCCAGCAaAUGCgacagcaaccgccuGCGGacCCUGUUCa -3'
miRNA:   3'- gGGUGGUCGUgUACG--------------UGCU--GGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.