miRNA display CGI


Results 1 - 20 of 804 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 94970 0.65 0.644242
Target:  5'- gGcCGGCcuuguacGCcAUGCUGGGGAuCGCCGUGu -3'
miRNA:   3'- gC-GCCG-------CGcUGCGGCUCCU-GCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 85641 0.65 0.644242
Target:  5'- cCGCGGUGCucucccgGGCagGUCGAGG-CGCCGc- -3'
miRNA:   3'- -GCGCCGCG-------CUG--CGGCUCCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 36615 0.65 0.644242
Target:  5'- gGgGGCGgGGgucUGCCgcgggagGAGGGCGCCGg- -3'
miRNA:   3'- gCgCCGCgCU---GCGG-------CUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 5714 0.65 0.644242
Target:  5'- gGgGGCGgGGgucUGCCgcgggagGAGGGCGCCGg- -3'
miRNA:   3'- gCgCCGCgCU---GCGG-------CUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 69447 0.65 0.643282
Target:  5'- aCGCGGCGCauccucugucgcGCgGCCGAGcACGCCcUGg -3'
miRNA:   3'- -GCGCCGCGc-----------UG-CGGCUCcUGCGGcAC- -5'
21558 5' -63.5 NC_004812.1 + 71695 0.65 0.642322
Target:  5'- gGUGGCGCaGAUGCCcgccccgcagcggcGAcGGugGgCGUGg -3'
miRNA:   3'- gCGCCGCG-CUGCGG--------------CU-CCugCgGCAC- -5'
21558 5' -63.5 NC_004812.1 + 46587 0.65 0.642322
Target:  5'- gCGCGGCcggguagcacaggaGCGGCGCgaCGGGGugGCg--- -3'
miRNA:   3'- -GCGCCG--------------CGCUGCG--GCUCCugCGgcac -5'
21558 5' -63.5 NC_004812.1 + 50682 0.66 0.639442
Target:  5'- uGCcucuGUGCGuCGCCGGGGAcucggcgagccgcgcCGCCGUu -3'
miRNA:   3'- gCGc---CGCGCuGCGGCUCCU---------------GCGGCAc -5'
21558 5' -63.5 NC_004812.1 + 88154 0.66 0.636561
Target:  5'- gCGCGcCGCGGCcaccaccgggaGCCccuucgugauguucaAGGACGCCGUGa -3'
miRNA:   3'- -GCGCcGCGCUG-----------CGGc--------------UCCUGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 149615 0.66 0.635601
Target:  5'- cCGCGGCgauguucguGCGACGCgaUGGGGGCGgggGUGg -3'
miRNA:   3'- -GCGCCG---------CGCUGCG--GCUCCUGCgg-CAC- -5'
21558 5' -63.5 NC_004812.1 + 112931 0.66 0.635601
Target:  5'- gGCaGCGCGGC-CCGcgcaGCGCCGUGu -3'
miRNA:   3'- gCGcCGCGCUGcGGCucc-UGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 52895 0.66 0.635601
Target:  5'- cCGaCGGUGCaGgGCuCGAGGGCGUCGc- -3'
miRNA:   3'- -GC-GCCGCGcUgCG-GCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 102954 0.66 0.635601
Target:  5'- gGCGGgGgGGCGUCGGGGuCGUagucgGUGu -3'
miRNA:   3'- gCGCCgCgCUGCGGCUCCuGCGg----CAC- -5'
21558 5' -63.5 NC_004812.1 + 15395 0.66 0.635601
Target:  5'- -cUGGCGacCGugGCCGGGGcCGUCGa- -3'
miRNA:   3'- gcGCCGC--GCugCGGCUCCuGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 143087 0.66 0.635601
Target:  5'- gGCcGUGCGACccgGCCGuc-ACGCCGUGg -3'
miRNA:   3'- gCGcCGCGCUG---CGGCuccUGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 86216 0.66 0.635601
Target:  5'- cCGCGGCaGCGACcuCCGuucGGCGCCuUGg -3'
miRNA:   3'- -GCGCCG-CGCUGc-GGCuc-CUGCGGcAC- -5'
21558 5' -63.5 NC_004812.1 + 119397 0.66 0.635601
Target:  5'- cCGgGGCcccccGCG-UGcCCGGGGGCGCCGc- -3'
miRNA:   3'- -GCgCCG-----CGCuGC-GGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 74887 0.66 0.635601
Target:  5'- gGCGcCGCGucuCGCCGAGcgcguccaGGCGCgCGUGc -3'
miRNA:   3'- gCGCcGCGCu--GCGGCUC--------CUGCG-GCAC- -5'
21558 5' -63.5 NC_004812.1 + 113240 0.66 0.635601
Target:  5'- gCGCGGcCGCGgaGCGCgucagCGAGaGcuucgcccgcaGCGCCGUGg -3'
miRNA:   3'- -GCGCC-GCGC--UGCG-----GCUC-C-----------UGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 83543 0.66 0.635601
Target:  5'- cCGCGaggaGCGCGGuCuCCG-GGAgGCCGUGc -3'
miRNA:   3'- -GCGC----CGCGCU-GcGGCuCCUgCGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.