miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 110287 0.66 0.760309
Target:  5'- cGGGcggACugGCG-GCGGCUgucgcCCGCGCGGcCc -3'
miRNA:   3'- -CCCa--UG--CGCuCGUCGA-----GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 46299 0.66 0.760309
Target:  5'- cGGaGgcCGCG-GCGGg-CCGCGCGGg- -3'
miRNA:   3'- -CC-CauGCGCuCGUCgaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 27738 0.66 0.760309
Target:  5'- gGGGgcCGCGGuCAGCgggCCGCccGCGGcCc -3'
miRNA:   3'- -CCCauGCGCUcGUCGa--GGCG--CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 3256 0.66 0.760309
Target:  5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3'
miRNA:   3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 35909 0.66 0.760309
Target:  5'- gGGGUccuCGaCGAGCucgcGCUCCcGgGCGGcCg -3'
miRNA:   3'- -CCCAu--GC-GCUCGu---CGAGG-CgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 115106 0.66 0.760309
Target:  5'- uGGGUcaGCGuCGAGCAGCaggcaCgGCGCGa-- -3'
miRNA:   3'- -CCCA--UGC-GCUCGUCGa----GgCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 128764 0.66 0.760309
Target:  5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3'
miRNA:   3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 105204 0.66 0.759388
Target:  5'- cGGGgcgcggGCGCGGGCcccgGGCUcuucgaaggacacCCGgGCGGg- -3'
miRNA:   3'- -CCCa-----UGCGCUCG----UCGA-------------GGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 107417 0.66 0.754769
Target:  5'- cGGGUGCGgccaggcccaccggcCGcGCGGCggCCGuCGCGGa- -3'
miRNA:   3'- -CCCAUGC---------------GCuCGUCGa-GGC-GCGCCag -5'
21567 3' -60.4 NC_004812.1 + 52321 0.66 0.751055
Target:  5'- gGGGUGgGCGGcacuuaaauacGCGGC-CCGCcccgGCgGGUCg -3'
miRNA:   3'- -CCCAUgCGCU-----------CGUCGaGGCG----CG-CCAG- -5'
21567 3' -60.4 NC_004812.1 + 89268 0.66 0.751055
Target:  5'- uGGG-ACGCGcaggccGCGGCgCgGCGCGGa- -3'
miRNA:   3'- -CCCaUGCGCu-----CGUCGaGgCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 40083 0.66 0.751055
Target:  5'- cGGGcg-GCGGGCGGCgggcggCCggGCGCGcGUCc -3'
miRNA:   3'- -CCCaugCGCUCGUCGa-----GG--CGCGC-CAG- -5'
21567 3' -60.4 NC_004812.1 + 18188 0.66 0.751055
Target:  5'- uGGG-GCGCcGGCAGCcccccgcgUCCaCGCGGUa -3'
miRNA:   3'- -CCCaUGCGcUCGUCG--------AGGcGCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 105417 0.66 0.751055
Target:  5'- uGGGgGCGCGAGgGgggaaggaacGCUCggUGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCgU----------CGAG--GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 59629 0.66 0.751055
Target:  5'- gGGGUgggGCGgGAGCGGC--CGCGgGGg- -3'
miRNA:   3'- -CCCA---UGCgCUCGUCGagGCGCgCCag -5'
21567 3' -60.4 NC_004812.1 + 146935 0.66 0.751055
Target:  5'- uGGGUuuccuCGCGGGCucgugGGUccgUCCGgGCGGg- -3'
miRNA:   3'- -CCCAu----GCGCUCG-----UCG---AGGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 105208 0.66 0.751055
Target:  5'- uGGUGgGCGAGC-GCgCCG-GCGGcCg -3'
miRNA:   3'- cCCAUgCGCUCGuCGaGGCgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 18275 0.66 0.751055
Target:  5'- -cGUGCGCGAuccGCAGggccucCUCCGCGcCGG-Cg -3'
miRNA:   3'- ccCAUGCGCU---CGUC------GAGGCGC-GCCaG- -5'
21567 3' -60.4 NC_004812.1 + 75613 0.66 0.751055
Target:  5'- cGGcgccgauCGCGAGCacgaccgaccAGCgcgCCGCGgCGGUCc -3'
miRNA:   3'- cCCau-----GCGCUCG----------UCGa--GGCGC-GCCAG- -5'
21567 3' -60.4 NC_004812.1 + 36719 0.66 0.751055
Target:  5'- cGGG-GCGCG-GCgGGCUCUGCG-GGcCg -3'
miRNA:   3'- -CCCaUGCGCuCG-UCGAGGCGCgCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.