miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 5' -54.1 NC_004812.1 + 152615 0.65 0.957434
Target:  5'- gGAGCgGCggcgagaGCAGGUGCccggGCcgGCGCGCg -3'
miRNA:   3'- gUUCGgCG-------CGUUCAUGa---UG--UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 121714 0.65 0.957434
Target:  5'- gGAGCgGCggcgagaGCAGGUGCccggGCcgGCGCGCg -3'
miRNA:   3'- gUUCGgCG-------CGUUCAUGa---UG--UGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 104742 0.66 0.955497
Target:  5'- -cGGCCGCGCAgaaGGUGCgcuuguugaacccgGCgACGCGg- -3'
miRNA:   3'- guUCGGCGCGU---UCAUGa-------------UG-UGCGCga -5'
21567 5' -54.1 NC_004812.1 + 1610 0.66 0.953905
Target:  5'- cCGGGCgcccCGCGCGAGggACcgUGCGCGCGg- -3'
miRNA:   3'- -GUUCG----GCGCGUUCa-UG--AUGUGCGCga -5'
21567 5' -54.1 NC_004812.1 + 140422 0.66 0.953905
Target:  5'- --cGCCGCGC----GCUGCugGCGa- -3'
miRNA:   3'- guuCGGCGCGuucaUGAUGugCGCga -5'
21567 5' -54.1 NC_004812.1 + 127302 0.66 0.953905
Target:  5'- gGAGCgCGUGCAucGGgccccgGCUGCGCGC-CUc -3'
miRNA:   3'- gUUCG-GCGCGU--UCa-----UGAUGUGCGcGA- -5'
21567 5' -54.1 NC_004812.1 + 1794 0.66 0.953905
Target:  5'- gGAGCgCGUGCAucGGgccccgGCUGCGCGC-CUc -3'
miRNA:   3'- gUUCG-GCGCGU--UCa-----UGAUGUGCGcGA- -5'
21567 5' -54.1 NC_004812.1 + 44035 0.66 0.953905
Target:  5'- -cGGCCGCGCGucacCUGCGCgucggacgGCGCg -3'
miRNA:   3'- guUCGGCGCGUucauGAUGUG--------CGCGa -5'
21567 5' -54.1 NC_004812.1 + 79527 0.66 0.953905
Target:  5'- --cGCCGCGCAgcGGaUGCgaaacgacgACGCgGCGCUc -3'
miRNA:   3'- guuCGGCGCGU--UC-AUGa--------UGUG-CGCGA- -5'
21567 5' -54.1 NC_004812.1 + 95012 0.66 0.953905
Target:  5'- --cGCuCGCGCAGGUGCUGgggcucCAC-CGCc -3'
miRNA:   3'- guuCG-GCGCGUUCAUGAU------GUGcGCGa -5'
21567 5' -54.1 NC_004812.1 + 145389 0.66 0.953905
Target:  5'- uGGGCCuGCGuCAccUGCcgGCGCGCGCg -3'
miRNA:   3'- gUUCGG-CGC-GUucAUGa-UGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 116193 0.66 0.953905
Target:  5'- --cGCCGUgGCGGGcUACUACGCG-GCc -3'
miRNA:   3'- guuCGGCG-CGUUC-AUGAUGUGCgCGa -5'
21567 5' -54.1 NC_004812.1 + 53021 0.66 0.953905
Target:  5'- cCGGGgCGCGCGG-----GCACGCGCa -3'
miRNA:   3'- -GUUCgGCGCGUUcaugaUGUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 103497 0.66 0.953905
Target:  5'- -cGGCCGC-CGGGUGa---GCGCGCg -3'
miRNA:   3'- guUCGGCGcGUUCAUgaugUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 44238 0.66 0.953905
Target:  5'- -uGGCCGcCGCGAGUcCgGCAgaGCGCg -3'
miRNA:   3'- guUCGGC-GCGUUCAuGaUGUg-CGCGa -5'
21567 5' -54.1 NC_004812.1 + 53439 0.66 0.953905
Target:  5'- gGGGCCGCGCugacgGCgGCcccCGCGCUc -3'
miRNA:   3'- gUUCGGCGCGuuca-UGaUGu--GCGCGA- -5'
21567 5' -54.1 NC_004812.1 + 130555 0.66 0.953905
Target:  5'- gGGGgCGCGCGAGg---GCGcCGCGCc -3'
miRNA:   3'- gUUCgGCGCGUUCaugaUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 118985 0.66 0.953905
Target:  5'- --cGCCGCGagca-GCUGgACGCGCa -3'
miRNA:   3'- guuCGGCGCguucaUGAUgUGCGCGa -5'
21567 5' -54.1 NC_004812.1 + 5046 0.66 0.953905
Target:  5'- gGGGgCGCGCGAGg---GCGcCGCGCc -3'
miRNA:   3'- gUUCgGCGCGUUCaugaUGU-GCGCGa -5'
21567 5' -54.1 NC_004812.1 + 127118 0.66 0.953905
Target:  5'- cCGGGCgcccCGCGCGAGggACcgUGCGCGCGg- -3'
miRNA:   3'- -GUUCG----GCGCGUUCa-UG--AUGUGCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.