miRNA display CGI


Results 1 - 20 of 1123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21582 3' -66.6 NC_004812.1 + 71689 0.66 0.478427
Target:  5'- gGGGCGgguggcgcagaugcCCGCCCCgCagcggcgacgguggGCGUGGGUGUGg -3'
miRNA:   3'- gUCCGU--------------GGCGGGG-G--------------UGCGCCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 67559 0.66 0.474922
Target:  5'- gCAGcucuCGCCGCCgCCACGCcGGCccucgGUGCa -3'
miRNA:   3'- -GUCc---GUGGCGGgGGUGCGcCCG-----CGCG- -5'
21582 3' -66.6 NC_004812.1 + 20999 0.66 0.474922
Target:  5'- cCAGGUGCacgaagcgcgUGCgCCCCAC-CGGGCcguugaggccGCGCa -3'
miRNA:   3'- -GUCCGUG----------GCG-GGGGUGcGCCCG----------CGCG- -5'
21582 3' -66.6 NC_004812.1 + 48137 0.66 0.474922
Target:  5'- gCGGGUgGCCGUCCUCgagGCGCGGcGcCGgGCg -3'
miRNA:   3'- -GUCCG-UGGCGGGGG---UGCGCC-C-GCgCG- -5'
21582 3' -66.6 NC_004812.1 + 111606 0.66 0.474922
Target:  5'- -uGGCGCCcgcgacguaCCUCCugaacuACGCgGGGCGCGUg -3'
miRNA:   3'- guCCGUGGc--------GGGGG------UGCG-CCCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 128240 0.66 0.474922
Target:  5'- -cGGCGCgGCgCagguCGCGCGcGGCGgGCc -3'
miRNA:   3'- guCCGUGgCGgGg---GUGCGC-CCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 99503 0.66 0.474922
Target:  5'- uGGGCGCCGUUCUUgaACG-GGGUccGCGCc -3'
miRNA:   3'- gUCCGUGGCGGGGG--UGCgCCCG--CGCG- -5'
21582 3' -66.6 NC_004812.1 + 55935 0.66 0.474922
Target:  5'- gAGGUgGCCugGCCCCCgACGaGGaGCGCGUc -3'
miRNA:   3'- gUCCG-UGG--CGGGGG-UGCgCC-CGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 128580 0.66 0.474922
Target:  5'- gAGGcCGCCGCgCgcgucgguCCAgGCGGGCGgGg -3'
miRNA:   3'- gUCC-GUGGCGgG--------GGUgCGCCCGCgCg -5'
21582 3' -66.6 NC_004812.1 + 95028 0.66 0.474922
Target:  5'- gGGGCuccACCGCCggaUCCGCGagggGGGUcccgGCGCg -3'
miRNA:   3'- gUCCG---UGGCGG---GGGUGCg---CCCG----CGCG- -5'
21582 3' -66.6 NC_004812.1 + 112905 0.66 0.474922
Target:  5'- -cGGCGacggagCGCCCUCGcCGCGaaGGCaGCGCg -3'
miRNA:   3'- guCCGUg-----GCGGGGGU-GCGC--CCG-CGCG- -5'
21582 3' -66.6 NC_004812.1 + 15292 0.66 0.474922
Target:  5'- -uGGUACaCGCgCCUCACGuCGGGgGgGUc -3'
miRNA:   3'- guCCGUG-GCG-GGGGUGC-GCCCgCgCG- -5'
21582 3' -66.6 NC_004812.1 + 119502 0.66 0.474922
Target:  5'- gGGGCGgCGUCCgcgggCCGC-CGGGCGCc- -3'
miRNA:   3'- gUCCGUgGCGGG-----GGUGcGCCCGCGcg -5'
21582 3' -66.6 NC_004812.1 + 60526 0.66 0.474922
Target:  5'- -cGGC-UCGCCCUCGaggacCGUGuGCGCGCg -3'
miRNA:   3'- guCCGuGGCGGGGGU-----GCGCcCGCGCG- -5'
21582 3' -66.6 NC_004812.1 + 100840 0.66 0.474922
Target:  5'- -cGGgGCUGCCCagGgGCaGGGCGCGa -3'
miRNA:   3'- guCCgUGGCGGGggUgCG-CCCGCGCg -5'
21582 3' -66.6 NC_004812.1 + 147743 0.66 0.474922
Target:  5'- gCGGGguCCGCgggacgcggggCUCC-CGCGGGaCGCGg -3'
miRNA:   3'- -GUCCguGGCG-----------GGGGuGCGCCC-GCGCg -5'
21582 3' -66.6 NC_004812.1 + 65156 0.66 0.474922
Target:  5'- --uGCAuCCGCCUUC-UGCGGGCGCu- -3'
miRNA:   3'- gucCGU-GGCGGGGGuGCGCCCGCGcg -5'
21582 3' -66.6 NC_004812.1 + 12369 0.66 0.474922
Target:  5'- gGGGCG-CGCCCggCCGCGCggccgggaGGGCGaagaGCc -3'
miRNA:   3'- gUCCGUgGCGGG--GGUGCG--------CCCGCg---CG- -5'
21582 3' -66.6 NC_004812.1 + 122438 0.66 0.474922
Target:  5'- cCGGGCGgCGUCUCCu--CGGGCG-GCg -3'
miRNA:   3'- -GUCCGUgGCGGGGGugcGCCCGCgCG- -5'
21582 3' -66.6 NC_004812.1 + 153339 0.66 0.474922
Target:  5'- cCGGGCGgCGUCUCCu--CGGGCG-GCg -3'
miRNA:   3'- -GUCCGUgGCGGGGGugcGCCCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.