miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21585 3' -62.7 NC_004812.1 + 152992 0.66 0.60749
Target:  5'- uGAG-CgCCGGgGCGGGC-CUGgGUCAGg -3'
miRNA:   3'- -CUCaG-GGUCgCGUCCGcGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 28408 0.66 0.60749
Target:  5'- --uUCCCGGUacaccucggcccGCAGGUGCgucucCGCCAGg -3'
miRNA:   3'- cucAGGGUCG------------CGUCCGCGac---GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 713 0.66 0.60749
Target:  5'- -cGUCggcgUCGGCGCcGGCGCgGuCGCCGGc -3'
miRNA:   3'- cuCAG----GGUCGCGuCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 127797 0.66 0.60749
Target:  5'- cGGGaCCaGGCuauuaaacaGCAGGCGCcGCGCCAc -3'
miRNA:   3'- -CUCaGGgUCG---------CGUCCGCGaCGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 138138 0.66 0.60749
Target:  5'- uGGGcCCCgcgGGCGCGGG-GCcGCGCCc- -3'
miRNA:   3'- -CUCaGGG---UCGCGUCCgCGaCGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 122091 0.66 0.60749
Target:  5'- uGAG-CgCCGGgGCGGGC-CUGgGUCAGg -3'
miRNA:   3'- -CUCaG-GGUCgCGUCCGcGACgCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 155593 0.66 0.60749
Target:  5'- cGGGcCCUcGCGgGGGCGCgGCcccgGCCGGg -3'
miRNA:   3'- -CUCaGGGuCGCgUCCGCGaCG----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 30084 0.66 0.60749
Target:  5'- cGGGcCCUcGCGgGGGCGCgGCcccgGCCGGg -3'
miRNA:   3'- -CUCaGGGuCGCgUCCGCGaCG----CGGUC- -5'
21585 3' -62.7 NC_004812.1 + 31614 0.66 0.60749
Target:  5'- -cGUCggcgUCGGCGCcGGCGCgGuCGCCGGc -3'
miRNA:   3'- cuCAG----GGUCGCGuCCGCGaC-GCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 112227 0.66 0.60749
Target:  5'- uGG-CCCuGCGCGGcGCcgcggGCUGCGCCc- -3'
miRNA:   3'- cUCaGGGuCGCGUC-CG-----CGACGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 37618 0.66 0.601557
Target:  5'- cAGUCCCGGUGCGcguccagcugcucgcGGCGCaUGagGCCGu -3'
miRNA:   3'- cUCAGGGUCGCGU---------------CCGCG-ACg-CGGUc -5'
21585 3' -62.7 NC_004812.1 + 43760 0.66 0.598594
Target:  5'- uGAG-CCCAGCGCgugagcgccgAGGCcacgcccugcgucuuCUGCGCCAu -3'
miRNA:   3'- -CUCaGGGUCGCG----------UCCGc--------------GACGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 98381 0.66 0.597607
Target:  5'- cGGGUCCUcgggcGGCGCGgcGGcCGCggggcgGCGCCGc -3'
miRNA:   3'- -CUCAGGG-----UCGCGU--CC-GCGa-----CGCGGUc -5'
21585 3' -62.7 NC_004812.1 + 43860 0.66 0.597607
Target:  5'- -cGUCCgGGCGCGgcGGCGCcGcCGCgCGGu -3'
miRNA:   3'- cuCAGGgUCGCGU--CCGCGaC-GCG-GUC- -5'
21585 3' -62.7 NC_004812.1 + 99692 0.66 0.597607
Target:  5'- aGGUCCgCGccGUGCGgcGGCGcCUGCGcCCAGg -3'
miRNA:   3'- cUCAGG-GU--CGCGU--CCGC-GACGC-GGUC- -5'
21585 3' -62.7 NC_004812.1 + 151964 0.66 0.597607
Target:  5'- cGAGccccUCCCcGCGCGGGCGUccCGCCc- -3'
miRNA:   3'- -CUC----AGGGuCGCGUCCGCGacGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 121063 0.66 0.597607
Target:  5'- cGAGccccUCCCcGCGCGGGCGUccCGCCc- -3'
miRNA:   3'- -CUC----AGGGuCGCGUCCGCGacGCGGuc -5'
21585 3' -62.7 NC_004812.1 + 118453 0.66 0.597607
Target:  5'- cGGGcCCCGGCGC-GGUGCaggccacgugGCGCguGg -3'
miRNA:   3'- -CUCaGGGUCGCGuCCGCGa---------CGCGguC- -5'
21585 3' -62.7 NC_004812.1 + 82672 0.66 0.59662
Target:  5'- -cGUCUggugCAGCagggcgaGCAGGCGCcgcuggGCGCCGGc -3'
miRNA:   3'- cuCAGG----GUCG-------CGUCCGCGa-----CGCGGUC- -5'
21585 3' -62.7 NC_004812.1 + 152807 0.66 0.594646
Target:  5'- cAGgCCgGGCGCGGGC-CUgaggucgggccugaGCGCCGGg -3'
miRNA:   3'- cUCaGGgUCGCGUCCGcGA--------------CGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.