miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21602 3' -60.2 NC_004812.1 + 50214 0.65 0.770044
Target:  5'- gGCCGUGaggccgagcggcgACCCCGaaaCCCgggcgaaggugAGGUCCACc -3'
miRNA:   3'- -CGGCACa------------UGGGGUgc-GGG-----------UCCAGGUG- -5'
21602 3' -60.2 NC_004812.1 + 24490 0.65 0.770044
Target:  5'- gGCCGcuccuggacggggGgcCCCCGCGCCgCGGGggCUGCg -3'
miRNA:   3'- -CGGCa------------CauGGGGUGCGG-GUCCa-GGUG- -5'
21602 3' -60.2 NC_004812.1 + 71904 0.66 0.768221
Target:  5'- cGCCGUccgacgcgucccccgGUGCgggCCugGCCCcgagcGGGUCCAg -3'
miRNA:   3'- -CGGCA---------------CAUGg--GGugCGGG-----UCCAGGUg -5'
21602 3' -60.2 NC_004812.1 + 97472 0.66 0.768221
Target:  5'- gGCgGUGUACCaggaCCugGCCCugagccagugccacgGGGUCUuuGCc -3'
miRNA:   3'- -CGgCACAUGG----GGugCGGG---------------UCCAGG--UG- -5'
21602 3' -60.2 NC_004812.1 + 21495 0.66 0.764562
Target:  5'- ------cACCCCAC-CCCAGGcCCACc -3'
miRNA:   3'- cggcacaUGGGGUGcGGGUCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 820 0.66 0.764562
Target:  5'- gGCCGggaagcgGUGUCCgACGCCCggAGGgccCCGCg -3'
miRNA:   3'- -CGGCa------CAUGGGgUGCGGG--UCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 639 0.66 0.764562
Target:  5'- aGCCGggaucgaGUGCgCCCaccaacgccGCGCCCGGG-CgGCg -3'
miRNA:   3'- -CGGCa------CAUG-GGG---------UGCGGGUCCaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 137371 0.66 0.764562
Target:  5'- gGCCGgaGUucgaGCCCCggggggGCGCCguGGaCCACu -3'
miRNA:   3'- -CGGCa-CA----UGGGG------UGCGGguCCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 126328 0.66 0.764562
Target:  5'- gGCCGggaagcgGUGUCCgACGCCCggAGGgccCCGCg -3'
miRNA:   3'- -CGGCa------CAUGGGgUGCGGG--UCCa--GGUG- -5'
21602 3' -60.2 NC_004812.1 + 69020 0.66 0.764562
Target:  5'- gGCCGgcggGU-CCCCAgGCCCAGcaUgGCg -3'
miRNA:   3'- -CGGCa---CAuGGGGUgCGGGUCcaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 31540 0.66 0.764562
Target:  5'- aGCCGggaucgaGUGCgCCCaccaacgccGCGCCCGGG-CgGCg -3'
miRNA:   3'- -CGGCa------CAUG-GGG---------UGCGGGUCCaGgUG- -5'
21602 3' -60.2 NC_004812.1 + 34549 0.66 0.755337
Target:  5'- aGCCcag-GCCCgGCGCCCAaGUCC-Cg -3'
miRNA:   3'- -CGGcacaUGGGgUGCGGGUcCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 1198 0.66 0.755337
Target:  5'- cGCCGcc-GCCaCCACGCCC-GGcCCGg -3'
miRNA:   3'- -CGGCacaUGG-GGUGCGGGuCCaGGUg -5'
21602 3' -60.2 NC_004812.1 + 132117 0.66 0.755337
Target:  5'- cGCgGgg-GCCCCcCGUCCAGGagcggCCGCc -3'
miRNA:   3'- -CGgCacaUGGGGuGCGGGUCCa----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 27605 0.66 0.755337
Target:  5'- gGCCccg-GgCCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGcacaUgGGGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 103593 0.66 0.755337
Target:  5'- -gCGcGUGCCCgCGCGCCCcGGgacgugCUACa -3'
miRNA:   3'- cgGCaCAUGGG-GUGCGGGuCCa-----GGUG- -5'
21602 3' -60.2 NC_004812.1 + 50033 0.66 0.755337
Target:  5'- cGCCGUcUGCgCCCG-GCCCGGGcgCCu- -3'
miRNA:   3'- -CGGCAcAUG-GGGUgCGGGUCCa-GGug -5'
21602 3' -60.2 NC_004812.1 + 153113 0.66 0.755337
Target:  5'- gGCCccg-GgCCCGCGCCCGcGGcCCGCc -3'
miRNA:   3'- -CGGcacaUgGGGUGCGGGU-CCaGGUG- -5'
21602 3' -60.2 NC_004812.1 + 3648 0.66 0.755337
Target:  5'- aGCCcag-GCCCgGCGCCCAaGUCC-Cg -3'
miRNA:   3'- -CGGcacaUGGGgUGCGGGUcCAGGuG- -5'
21602 3' -60.2 NC_004812.1 + 124418 0.66 0.755337
Target:  5'- gGCCGUGcuggacgugGCCCgGagGCaCCcGGUCCGCg -3'
miRNA:   3'- -CGGCACa--------UGGGgUg-CG-GGuCCAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.