miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 3' -56.9 NC_004812.1 + 32568 0.66 0.852336
Target:  5'- ---cGUUGGCCgcggcgccgcggcccGcCCGCGGCGggGg-- -3'
miRNA:   3'- uuuuCAACCGG---------------C-GGCGCCGCuuCgau -5'
21606 3' -56.9 NC_004812.1 + 1667 0.66 0.852336
Target:  5'- ---cGUUGGCCgcggcgccgcggcccGcCCGCGGCGggGg-- -3'
miRNA:   3'- uuuuCAACCGG---------------C-GGCGCCGCuuCgau -5'
21606 3' -56.9 NC_004812.1 + 96693 0.66 0.852336
Target:  5'- -cGAGUgGGCCGgcaucgccgcgggguCCGCGGCGGcgauagGGCUc -3'
miRNA:   3'- uuUUCAaCCGGC---------------GGCGCCGCU------UCGAu -5'
21606 3' -56.9 NC_004812.1 + 156201 0.66 0.849123
Target:  5'- gGGGAGggGGCCGCUGgGGaGAGGg-- -3'
miRNA:   3'- -UUUUCaaCCGGCGGCgCCgCUUCgau -5'
21606 3' -56.9 NC_004812.1 + 87041 0.66 0.849123
Target:  5'- ---cGgaGGCgGCUGCGGCGcGGCc- -3'
miRNA:   3'- uuuuCaaCCGgCGGCGCCGCuUCGau -5'
21606 3' -56.9 NC_004812.1 + 156130 0.66 0.849123
Target:  5'- aAGGGGUgacgGGCCG-CGCGgacGCGggGCg- -3'
miRNA:   3'- -UUUUCAa---CCGGCgGCGC---CGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 23491 0.66 0.849123
Target:  5'- gGAGGGUgugcggcgGGCCgGgCGCGGCGgcGCc- -3'
miRNA:   3'- -UUUUCAa-------CCGG-CgGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 16195 0.66 0.849123
Target:  5'- uGGAGUUGGCgGCgGCgacGGUGggGgUGg -3'
miRNA:   3'- uUUUCAACCGgCGgCG---CCGCuuCgAU- -5'
21606 3' -56.9 NC_004812.1 + 30622 0.66 0.849123
Target:  5'- aAGGGGUgacgGGCCG-CGCGgacGCGggGCg- -3'
miRNA:   3'- -UUUUCAa---CCGGCgGCGC---CGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 108529 0.66 0.849123
Target:  5'- ---cGgcGGCCGCCGaguacgcgccCGGCGAGucGCUGc -3'
miRNA:   3'- uuuuCaaCCGGCGGC----------GCCGCUU--CGAU- -5'
21606 3' -56.9 NC_004812.1 + 16218 0.66 0.849123
Target:  5'- ------gGGCCGCgCGCcggaGGCGGAGCc- -3'
miRNA:   3'- uuuucaaCCGGCG-GCG----CCGCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 92717 0.66 0.849123
Target:  5'- -cAGGUguuucuGCCGCUGgGGCGcGAGCUGu -3'
miRNA:   3'- uuUUCAac----CGGCGGCgCCGC-UUCGAU- -5'
21606 3' -56.9 NC_004812.1 + 46920 0.66 0.849123
Target:  5'- -------cGCCGCCGCGGCGGAc--- -3'
miRNA:   3'- uuuucaacCGGCGGCGCCGCUUcgau -5'
21606 3' -56.9 NC_004812.1 + 114271 0.66 0.849123
Target:  5'- --uAGUaGGCCGUCGCGaGCuucuGGAGCg- -3'
miRNA:   3'- uuuUCAaCCGGCGGCGC-CG----CUUCGau -5'
21606 3' -56.9 NC_004812.1 + 64113 0.66 0.849123
Target:  5'- cGGAAGccgGGCCGCCGCcucgacGGCcAAGCc- -3'
miRNA:   3'- -UUUUCaa-CCGGCGGCG------CCGcUUCGau -5'
21606 3' -56.9 NC_004812.1 + 83782 0.66 0.849123
Target:  5'- ------cGGCCGCuCGCGG-GGAGCc- -3'
miRNA:   3'- uuuucaaCCGGCG-GCGCCgCUUCGau -5'
21606 3' -56.9 NC_004812.1 + 30693 0.66 0.849123
Target:  5'- gGGGAGggGGCCGCUGgGGaGAGGg-- -3'
miRNA:   3'- -UUUUCaaCCGGCGGCgCCgCUUCgau -5'
21606 3' -56.9 NC_004812.1 + 148999 0.66 0.849123
Target:  5'- gGAGGGUgugcggcgGGCCgGgCGCGGCGgcGCc- -3'
miRNA:   3'- -UUUUCAa-------CCGG-CgGCGCCGCuuCGau -5'
21606 3' -56.9 NC_004812.1 + 18440 0.66 0.840949
Target:  5'- ---cGggGGCCGCguccgguggCGCGGCGggGg-- -3'
miRNA:   3'- uuuuCaaCCGGCG---------GCGCCGCuuCgau -5'
21606 3' -56.9 NC_004812.1 + 149657 0.66 0.840949
Target:  5'- gAAGGGggGGCgCGaaaCGgGGCGggGUUGu -3'
miRNA:   3'- -UUUUCaaCCG-GCg--GCgCCGCuuCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.