miRNA display CGI

Results 1 - 20 of 1515 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21606	5'	-63.5	NC_004812.1	+	149544	0.65	0.642442
	Target:  5'- gGUGAUCCGucguugcUAG-GCGACGggggacGCCGCCCc -3' miRNA:   3'- gCGCUGGGU-------GUCgCGCUGC------CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	121228	0.65	0.642442
	Target:  5'- aCGUGGCCCACGaguccuuugccacGgGgGGCG-UCGCCCc -3' miRNA:   3'- -GCGCUGGGUGU-------------CgCgCUGCcGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	24035	0.65	0.642442
	Target:  5'- gGUGAUCCGucguugcUAG-GCGACGggggacGCCGCCCc -3' miRNA:   3'- gCGCUGGGU-------GUCgCGCUGC------CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	100803	0.65	0.642442
	Target:  5'- uCG-GGCCCGaagaccucguucuCGGCGCuGACgaccgcggGGCUGCCCa -3' miRNA:   3'- -GCgCUGGGU-------------GUCGCG-CUG--------CCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	95124	0.65	0.642442
	Target:  5'- gGCGGCUCugGGgGCGGaccgucccggGGCCcuacaaaGCCCg -3' miRNA:   3'- gCGCUGGGugUCgCGCUg---------CCGG-------CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	26280	0.65	0.641481
	Target:  5'- gCGCGGgugcCCCGCGGCGacaggggaaggucgGgggucggcgggguucGCGGCCGCUCg -3' miRNA:   3'- -GCGCU----GGGUGUCGCg-------------C---------------UGCCGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	127284	0.65	0.641481
	Target:  5'- cCGCGcCCCGCgccgacgggAGCGCGugcaucgggcccCGGCUGCgCg -3' miRNA:   3'- -GCGCuGGGUG---------UCGCGCu-----------GCCGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	1776	0.65	0.641481
	Target:  5'- cCGCGcCCCGCgccgacgggAGCGCGugcaucgggcccCGGCUGCgCg -3' miRNA:   3'- -GCGCuGGGUG---------UCGCGCu-----------GCCGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	44641	0.65	0.64052
	Target:  5'- cCGCGGCCCcuucuccgaccccgGCGGgGcCGACucGCCGCgCg -3' miRNA:   3'- -GCGCUGGG--------------UGUCgC-GCUGc-CGGCGgG- -5'
21606	5'	-63.5	NC_004812.1	+	96751	0.66	0.633794
	Target:  5'- gGCG-UCUAC-GUGCGGCGcGCCGUCg -3' miRNA:   3'- gCGCuGGGUGuCGCGCUGC-CGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	101003	0.66	0.633794
	Target:  5'- gGCcGCCUcgcGCGGCGCGaggcaGCGGaUCGCCUc -3' miRNA:   3'- gCGcUGGG---UGUCGCGC-----UGCC-GGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	94737	0.66	0.633794
	Target:  5'- uCGCcACCUuucuggucgccGCGGCGC--UGGCCGCCg -3' miRNA:   3'- -GCGcUGGG-----------UGUCGCGcuGCCGGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	124312	0.66	0.633794
	Target:  5'- gGCGGCgagagggggCGCGGCGCGggGCGGgCCGUCg -3' miRNA:   3'- gCGCUGg--------GUGUCGCGC--UGCC-GGCGGg -5'
21606	5'	-63.5	NC_004812.1	+	2598	0.66	0.633794
	Target:  5'- cCGCcGCCgACGGCaccggacucuccGCGcCGGCCccGCCCc -3' miRNA:   3'- -GCGcUGGgUGUCG------------CGCuGCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	47677	0.66	0.633794
	Target:  5'- cCGacaGACCCACGacccccGgGCGAuuacccgaccCGGgCGCCCg -3' miRNA:   3'- -GCg--CUGGGUGU------CgCGCU----------GCCgGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	155574	0.66	0.633794
	Target:  5'- aGgGGCgCGC-GCG-GGCGGCCggGCCCu -3' miRNA:   3'- gCgCUGgGUGuCGCgCUGCCGG--CGGG- -5'
21606	5'	-63.5	NC_004812.1	+	15108	0.66	0.633794
	Target:  5'- aGCG-CCUGguGCGCcgguACGGCggCGCCCc -3' miRNA:   3'- gCGCuGGGUguCGCGc---UGCCG--GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	127070	0.66	0.633794
	Target:  5'- ----cCCUAC-GCGCG-CGaGCCGCCCg -3' miRNA:   3'- gcgcuGGGUGuCGCGCuGC-CGGCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	119292	0.66	0.633794
	Target:  5'- gGCGGgCUguACGGCGCGccguacccCGGCguCGCCCu -3' miRNA:   3'- gCGCUgGG--UGUCGCGCu-------GCCG--GCGGG- -5'
21606	5'	-63.5	NC_004812.1	+	10207	0.66	0.633794
	Target:  5'- aCGCGgaGCUgGCcGCGC-ACGGCUGUCUg -3' miRNA:   3'- -GCGC--UGGgUGuCGCGcUGCCGGCGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home