miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 558 0.66 0.760995
Target:  5'- cGCGccGCGCGaCGCCCgCCCGUCccGCg--- -3'
miRNA:   3'- -CGCa-UGUGC-GCGGG-GGGCAG--CGagag -5'
21658 3' -60.5 NC_004812.1 + 146358 0.66 0.760995
Target:  5'- uGCGU-CGCgGCGUucgUCCUCGUCGCgcugaUCUCa -3'
miRNA:   3'- -CGCAuGUG-CGCG---GGGGGCAGCG-----AGAG- -5'
21658 3' -60.5 NC_004812.1 + 126066 0.66 0.760995
Target:  5'- cGCGccGCGCGaCGCCCgCCCGUCccGCg--- -3'
miRNA:   3'- -CGCa-UGUGC-GCGGG-GGGCAG--CGagag -5'
21658 3' -60.5 NC_004812.1 + 98336 0.66 0.760995
Target:  5'- cGCGUACGC-CGaCCggCCGUCGUcCUCg -3'
miRNA:   3'- -CGCAUGUGcGC-GGggGGCAGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 65913 0.66 0.760995
Target:  5'- aCGU-C-CGCGUCCgUCGUCGUUCUUu -3'
miRNA:   3'- cGCAuGuGCGCGGGgGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 144248 0.66 0.760995
Target:  5'- cGCGgccGgGCGCGCCCCCCGcCa----- -3'
miRNA:   3'- -CGCa--UgUGCGCGGGGGGCaGcgagag -5'
21658 3' -60.5 NC_004812.1 + 47697 0.66 0.760995
Target:  5'- cGCGgcCGCGgGCCCCCgGgCGUaCUg -3'
miRNA:   3'- -CGCauGUGCgCGGGGGgCaGCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 139849 0.66 0.760995
Target:  5'- cGCGUcuucggGCcCGCGgCCCCCGgggCGCcCUg -3'
miRNA:   3'- -CGCA------UGuGCGCgGGGGGCa--GCGaGAg -5'
21658 3' -60.5 NC_004812.1 + 42089 0.66 0.760079
Target:  5'- cGCGUccGCcgacccgACGCGCCCCggaguccgCCGUCGCcCg- -3'
miRNA:   3'- -CGCA--UG-------UGCGCGGGG--------GGCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 60341 0.66 0.751788
Target:  5'- cGCGgGgGCGCcagGCCCgCCCG-CGC-CUCg -3'
miRNA:   3'- -CGCaUgUGCG---CGGG-GGGCaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 112389 0.66 0.751788
Target:  5'- gGCGgccACACGCGUUCgCCCGUcCGCg--- -3'
miRNA:   3'- -CGCa--UGUGCGCGGG-GGGCA-GCGagag -5'
21658 3' -60.5 NC_004812.1 + 133239 0.66 0.751788
Target:  5'- cCGggAUcCGCGCCCgUCGUC-CUCUCg -3'
miRNA:   3'- cGCa-UGuGCGCGGGgGGCAGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 37368 0.66 0.751788
Target:  5'- gGCGUACACgcggucgaaGCGCaCCCCCGcggUGCa--- -3'
miRNA:   3'- -CGCAUGUG---------CGCG-GGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 6007 0.66 0.751788
Target:  5'- cGCGUcgGCGCgcggcgGCGCCgCCCCGUCGa---- -3'
miRNA:   3'- -CGCA--UGUG------CGCGG-GGGGCAGCgagag -5'
21658 3' -60.5 NC_004812.1 + 131516 0.66 0.751788
Target:  5'- cGCGUcgGCGCgcggcgGCGCCgCCCCGUCGa---- -3'
miRNA:   3'- -CGCA--UGUG------CGCGG-GGGGCAGCgagag -5'
21658 3' -60.5 NC_004812.1 + 44025 0.66 0.751788
Target:  5'- gGCGU-CGucCGCGUCCUCgaaGUCGCUgUCg -3'
miRNA:   3'- -CGCAuGU--GCGCGGGGGg--CAGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 7731 0.66 0.751788
Target:  5'- cCGggAUcCGCGCCCgUCGUC-CUCUCg -3'
miRNA:   3'- cGCa-UGuGCGCGGGgGGCAGcGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 90650 0.66 0.751788
Target:  5'- aGCGa--GCGCGCCagguCCUCGUCGCgggcgUCUUg -3'
miRNA:   3'- -CGCaugUGCGCGG----GGGGCAGCG-----AGAG- -5'
21658 3' -60.5 NC_004812.1 + 101330 0.66 0.751788
Target:  5'- gGCGUGCAgGCGCUCgCCGcagaggcgggCGUUCg- -3'
miRNA:   3'- -CGCAUGUgCGCGGGgGGCa---------GCGAGag -5'
21658 3' -60.5 NC_004812.1 + 96273 0.66 0.751788
Target:  5'- gGCGggcCugGCGCCCCCg--CGCaacCUCa -3'
miRNA:   3'- -CGCau-GugCGCGGGGGgcaGCGa--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.