Results 1 - 20 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21658 | 5' | -56.4 | NC_004812.1 | + | 103965 | 0.66 | 0.903501 |
Target: 5'- cCGggGGGAcCGGAacgGGGGGcUGCgGCAUa -3' miRNA: 3'- -GCuuCUCUcGCCU---CUCCC-ACG-CGUAc -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 86796 | 0.66 | 0.903501 |
Target: 5'- cCGggGGGAGaGGAgGAGGGcgGCgGCGa- -3' miRNA: 3'- -GCuuCUCUCgCCU-CUCCCa-CG-CGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 36865 | 0.66 | 0.903501 |
Target: 5'- cCGggGAGGccGCGGGGgggcgaguacgcGGGGUgguagGCGCcgGg -3' miRNA: 3'- -GCuuCUCU--CGCCUC------------UCCCA-----CGCGuaC- -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 99838 | 0.66 | 0.903501 |
Target: 5'- gGGAGGGGGgGGAgGAGGGggacGuCGCGg- -3' miRNA: 3'- gCUUCUCUCgCCU-CUCCCa---C-GCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 123542 | 0.66 | 0.897123 |
Target: 5'- aGGAGAGGGCGGGGcGGaG-GCGgGg- -3' miRNA: 3'- gCUUCUCUCGCCUCuCC-CaCGCgUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 54137 | 0.66 | 0.897123 |
Target: 5'- gGAGGGGGGUGGGGuGGGcucccgGCgGCGg- -3' miRNA: 3'- gCUUCUCUCGCCUCuCCCa-----CG-CGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 91075 | 0.66 | 0.897123 |
Target: 5'- uCGAAGAccggGGGCGaGGGGGGGcgccagggGCGCGc- -3' miRNA: 3'- -GCUUCU----CUCGC-CUCUCCCa-------CGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 5964 | 0.66 | 0.897123 |
Target: 5'- cCGggGAGGccGCGGGGgggcgagucgcGGGGUgguagGCGCcgGg -3' miRNA: 3'- -GCuuCUCU--CGCCUC-----------UCCCA-----CGCGuaC- -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 37497 | 0.66 | 0.890516 |
Target: 5'- gCGAaacAGAG-GCGGGGGuGGGUGgGUgggGUGg -3' miRNA: 3'- -GCU---UCUCuCGCCUCU-CCCACgCG---UAC- -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 129648 | 0.66 | 0.890516 |
Target: 5'- uCGGAGAGGGCGGccgccAGGcGGcGcUGCGCGg- -3' miRNA: 3'- -GCUUCUCUCGCC-----UCU-CC-C-ACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 30861 | 0.66 | 0.890516 |
Target: 5'- cCGGccauGGGGGGCcGAGGGGGcGCGCu-- -3' miRNA: 3'- -GCU----UCUCUCGcCUCUCCCaCGCGuac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 131061 | 0.66 | 0.890516 |
Target: 5'- cCGgcGAGGcgcccGCGGAGAGcGUGCacGCGUGc -3' miRNA: 3'- -GCuuCUCU-----CGCCUCUCcCACG--CGUAC- -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 141792 | 0.66 | 0.890516 |
Target: 5'- gCGggG-GGGCGGGccgcgcGGGGGUGcCGCu-- -3' miRNA: 3'- -GCuuCuCUCGCCU------CUCCCAC-GCGuac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 6596 | 0.66 | 0.890516 |
Target: 5'- gCGAaacAGAG-GCGGGGGuGGGUGgGUgggGUGg -3' miRNA: 3'- -GCU---UCUCuCGCCUCU-CCCACgCG---UAC- -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 4139 | 0.66 | 0.890516 |
Target: 5'- uCGGAGAGGGCGGccgccAGGcGGcGcUGCGCGg- -3' miRNA: 3'- -GCUUCUCUCGCC-----UCU-CC-C-ACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148502 | 0.66 | 0.883683 |
Target: 5'- uCGggGuuccGGGCcgggGGAGGGGGggcgGCGCGg- -3' miRNA: 3'- -GCuuCu---CUCG----CCUCUCCCa---CGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 122217 | 0.66 | 0.883683 |
Target: 5'- aGAAGGGGcGCGagacGGGAGGGUGUGgGc- -3' miRNA: 3'- gCUUCUCU-CGC----CUCUCCCACGCgUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 117601 | 0.66 | 0.883683 |
Target: 5'- uCGggGuuccGGGCcgggGGAGGGGGggcgGCGCGg- -3' miRNA: 3'- -GCuuCu---CUCG----CCUCUCCCa---CGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 5860 | 0.66 | 0.883683 |
Target: 5'- gCGggGGGAacaugggcGCGGGccGGGGG-GCGCGg- -3' miRNA: 3'- -GCuuCUCU--------CGCCU--CUCCCaCGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 71815 | 0.66 | 0.883683 |
Target: 5'- uGAGGuGguGGCGGAaggggGAGGGUGCgGCGg- -3' miRNA: 3'- gCUUCuC--UCGCCU-----CUCCCACG-CGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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