miRNA display CGI


Results 1 - 20 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 106435 0.66 0.986032
Target:  5'- cGCC-GGCCACgGGCCcaagagGGCcCGGCGGa -3'
miRNA:   3'- -CGGaUUGGUGgUCGG------UUGuGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 2145 0.66 0.986032
Target:  5'- gGCC---CCGCgGGCgGggcuCGCGGCGGCg -3'
miRNA:   3'- -CGGauuGGUGgUCGgUu---GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 8499 0.66 0.986032
Target:  5'- gGCCggcGGCCGCCcgAGCCGGCugccuuuUAucccggucgccGCGGCg -3'
miRNA:   3'- -CGGa--UUGGUGG--UCGGUUGu------GU-----------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 127585 0.66 0.986032
Target:  5'- cGCCccccgcguCUACCAGUCcuCGgGGCGGCc -3'
miRNA:   3'- -CGGauu-----GGUGGUCGGuuGUgUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 33869 0.66 0.986032
Target:  5'- cGCCcucuccCCGCCcGCC--CGCAugGGCc -3'
miRNA:   3'- -CGGauu---GGUGGuCGGuuGUGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 127654 0.66 0.986032
Target:  5'- gGCC---CCGCgGGCgGggcuCGCGGCGGCg -3'
miRNA:   3'- -CGGauuGGUGgUCGgUu---GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 77854 0.66 0.986032
Target:  5'- cGCCgcgcACCucCCGGUCuuCGgCGGCGGCc -3'
miRNA:   3'- -CGGau--UGGu-GGUCGGuuGU-GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 95913 0.66 0.986032
Target:  5'- gGUCUA-CUcgaucgaggggACCuucCCGACGCAGCGGCu -3'
miRNA:   3'- -CGGAUuGG-----------UGGuc-GGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 76489 0.66 0.986032
Target:  5'- cGCCggaucccgGACgGCCGGgCu-CAgGGCGGCg -3'
miRNA:   3'- -CGGa-------UUGgUGGUCgGuuGUgUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 21402 0.66 0.986032
Target:  5'- cGUCUcGCCGCgC-GCCGACGCGucGCaGCg -3'
miRNA:   3'- -CGGAuUGGUG-GuCGGUUGUGU--UGcCG- -5'
21702 3' -52.4 NC_004812.1 + 121848 0.66 0.986032
Target:  5'- aGCUgauCCACCccgaggccccggGGCCGcccCAgGACGGCg -3'
miRNA:   3'- -CGGauuGGUGG------------UCGGUu--GUgUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 133949 0.66 0.986032
Target:  5'- gGCUc--CCGCCGGCCccgGGCAC-GCGGg -3'
miRNA:   3'- -CGGauuGGUGGUCGG---UUGUGuUGCCg -5'
21702 3' -52.4 NC_004812.1 + 86578 0.66 0.986032
Target:  5'- cGCCUuugucaccCCACCcGCC--CGCGGCGGg -3'
miRNA:   3'- -CGGAuu------GGUGGuCGGuuGUGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 140637 0.66 0.986032
Target:  5'- gGUCggcGCCGCCGGCCGcgGgGCGucCGGUc -3'
miRNA:   3'- -CGGau-UGGUGGUCGGU--UgUGUu-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 71930 0.66 0.986032
Target:  5'- gGCCUGGCCccgagcggguCCAGCCccaacaacCACAGCguGGUg -3'
miRNA:   3'- -CGGAUUGGu---------GGUCGGuu------GUGUUG--CCG- -5'
21702 3' -52.4 NC_004812.1 + 39400 0.66 0.986032
Target:  5'- gGCCggcGGCCGCCcgAGCCGGCugccuuuUAucccggucgccGCGGCg -3'
miRNA:   3'- -CGGa--UUGGUGG--UCGGUUGu------GU-----------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 93002 0.66 0.986032
Target:  5'- uGCCgcagGACCG--GGCCGACguGCAGCuGCg -3'
miRNA:   3'- -CGGa---UUGGUggUCGGUUG--UGUUGcCG- -5'
21702 3' -52.4 NC_004812.1 + 94533 0.66 0.986032
Target:  5'- aCCUcggGGCCGCC-GCCcuguCGGCGGCc -3'
miRNA:   3'- cGGA---UUGGUGGuCGGuuguGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 94257 0.66 0.986032
Target:  5'- cGCCgacccacgcGCCGCgGGCgcGCGCcGCGGCc -3'
miRNA:   3'- -CGGau-------UGGUGgUCGguUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2076 0.66 0.986032
Target:  5'- cGCCccccgcguCUACCAGUCcuCGgGGCGGCc -3'
miRNA:   3'- -CGGauu-----GGUGGUCGGuuGUgUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.