miRNA display CGI


Results 1 - 20 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 5' -60.9 NC_004812.1 + 37230 0.66 0.745848
Target:  5'- gCGGCCGUUGUGcagcauGGCGuuGaGCGuGuuGGc -3'
miRNA:   3'- -GUCGGCAACACu-----CCGCu-C-CGC-CggCC- -5'
21702 5' -60.9 NC_004812.1 + 26019 0.66 0.745848
Target:  5'- -uGCCGacgcggacgGcGAcGGCGGGGCcggGGCCGGg -3'
miRNA:   3'- guCGGCaa-------CaCU-CCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155164 0.66 0.745848
Target:  5'- gCGGUCGUg--GGGGCGGGGa--CCGGg -3'
miRNA:   3'- -GUCGGCAacaCUCCGCUCCgccGGCC- -5'
21702 5' -60.9 NC_004812.1 + 151528 0.66 0.745848
Target:  5'- -uGCCGacgcggacgGcGAcGGCGGGGCcggGGCCGGg -3'
miRNA:   3'- guCGGCaa-------CaCU-CCGCUCCG---CCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 29524 0.66 0.745848
Target:  5'- gAGCCGUgcgGGGGgGAcccgGGCGGCuCGc -3'
miRNA:   3'- gUCGGCAacaCUCCgCU----CCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 128364 0.66 0.745848
Target:  5'- gGGCaCGgcGUccacgacgacGAGGC--GGCGGCCGGc -3'
miRNA:   3'- gUCG-GCaaCA----------CUCCGcuCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 17309 0.66 0.745848
Target:  5'- cCGGCCGUcccguUGgcgGGGGUGGugguGGgGGCgGGg -3'
miRNA:   3'- -GUCGGCA-----ACa--CUCCGCU----CCgCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 97972 0.66 0.745848
Target:  5'- -cGCCGguccUGGGGCGGuG-GGCCGGg -3'
miRNA:   3'- guCGGCaac-ACUCCGCUcCgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 2856 0.66 0.745848
Target:  5'- gGGCaCGgcGUccacgacgacGAGGC--GGCGGCCGGc -3'
miRNA:   3'- gUCG-GCaaCA----------CUCCGcuCCGCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 18818 0.66 0.745848
Target:  5'- gGGCgGgUGUGcGGCG-GGCGGCgGu -3'
miRNA:   3'- gUCGgCaACACuCCGCuCCGCCGgCc -5'
21702 5' -60.9 NC_004812.1 + 13323 0.66 0.745848
Target:  5'- -cGCCGggGgucgGGGGUGcGGCGgucccuuccgcGCCGGg -3'
miRNA:   3'- guCGGCaaCa---CUCCGCuCCGC-----------CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 34833 0.66 0.745848
Target:  5'- gUAGCCGUccUG-GGCGcucaGGGCGaagaGCCGGg -3'
miRNA:   3'- -GUCGGCAacACuCCGC----UCCGC----CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 155032 0.66 0.745848
Target:  5'- gAGCCGUgcgGGGGgGAcccgGGCGGCuCGc -3'
miRNA:   3'- gUCGGCAacaCUCCgCU----CCGCCG-GCc -5'
21702 5' -60.9 NC_004812.1 + 124263 0.66 0.745848
Target:  5'- gCGGUCGUg--GGGGCGGGGa--CCGGg -3'
miRNA:   3'- -GUCGGCAacaCUCCGCUCCgccGGCC- -5'
21702 5' -60.9 NC_004812.1 + 112233 0.66 0.744917
Target:  5'- cCGGCCGgacgcgGGGGCGGacggggcgugguuGGUGGgCGGg -3'
miRNA:   3'- -GUCGGCaaca--CUCCGCU-------------CCGCCgGCC- -5'
21702 5' -60.9 NC_004812.1 + 78978 0.66 0.744917
Target:  5'- -cGCCGggGgucgGGGGUgcgccgggggucgGGGGUGcGCCGGg -3'
miRNA:   3'- guCGGCaaCa---CUCCG-------------CUCCGC-CGGCC- -5'
21702 5' -60.9 NC_004812.1 + 142193 0.66 0.736497
Target:  5'- uGGCCGgcGcGGGGCu-GGCcGCCGGc -3'
miRNA:   3'- gUCGGCaaCaCUCCGcuCCGcCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 114482 0.66 0.736497
Target:  5'- uGGCCGccg-GGGGaaGGGCGGCgGGc -3'
miRNA:   3'- gUCGGCaacaCUCCgcUCCGCCGgCC- -5'
21702 5' -60.9 NC_004812.1 + 54608 0.66 0.736497
Target:  5'- uGGCCGc---GGGGaCGGGcGgGGCCGGa -3'
miRNA:   3'- gUCGGCaacaCUCC-GCUC-CgCCGGCC- -5'
21702 5' -60.9 NC_004812.1 + 30166 0.66 0.736497
Target:  5'- aCAGCCGg---GAGcGCGcGGCgGGCuCGGc -3'
miRNA:   3'- -GUCGGCaacaCUC-CGCuCCG-CCG-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.