miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 5' -62.8 NC_004812.1 + 95991 0.66 0.647661
Target:  5'- cCUCUggaUCCgGGgGC-CCGCCGAgcgcccccUCCGCu -3'
miRNA:   3'- -GAGG---AGG-CCgCGaGGCGGCU--------AGGCGu -5'
21714 5' -62.8 NC_004812.1 + 40892 0.66 0.647661
Target:  5'- --aCUCCGGCGCcUUGCCGuGUCCcCAu -3'
miRNA:   3'- gagGAGGCCGCGaGGCGGC-UAGGcGU- -5'
21714 5' -62.8 NC_004812.1 + 96526 0.66 0.647661
Target:  5'- -gCCUacCUGGCGCgggCCGCCGGccuggUCgGCGc -3'
miRNA:   3'- gaGGA--GGCCGCGa--GGCGGCU-----AGgCGU- -5'
21714 5' -62.8 NC_004812.1 + 131412 0.66 0.647661
Target:  5'- gUCCgCCGGCggGCggagCCGCCGcgacgCCGCc -3'
miRNA:   3'- gAGGaGGCCG--CGa---GGCGGCua---GGCGu -5'
21714 5' -62.8 NC_004812.1 + 5904 0.66 0.647661
Target:  5'- gUCCgCCGGCggGCggagCCGCCGcgacgCCGCc -3'
miRNA:   3'- gAGGaGGCCG--CGa---GGCGGCua---GGCGu -5'
21714 5' -62.8 NC_004812.1 + 28907 0.66 0.647661
Target:  5'- gUCCgcgCCguGGCGCgCCuCCGGUUCGCGg -3'
miRNA:   3'- gAGGa--GG--CCGCGaGGcGGCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 52556 0.66 0.647661
Target:  5'- gUCCgaCCGGCaccgccgaGCUCC-CCGAcgCCGCGa -3'
miRNA:   3'- gAGGa-GGCCG--------CGAGGcGGCUa-GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 38365 0.66 0.644743
Target:  5'- aCUCCUCCugcaggcgggcggcGGgGC-CCGCCGGgagcUCgGCGa -3'
miRNA:   3'- -GAGGAGG--------------CCgCGaGGCGGCU----AGgCGU- -5'
21714 5' -62.8 NC_004812.1 + 115452 0.66 0.637932
Target:  5'- -gCCUggCGGCGCgCCGCUGGgcucgCCGCGc -3'
miRNA:   3'- gaGGAg-GCCGCGaGGCGGCUa----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 12967 0.66 0.637932
Target:  5'- -gUCgaaCGGCGCUCCGCgccCGGggCCGCGc -3'
miRNA:   3'- gaGGag-GCCGCGAGGCG---GCUa-GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 43614 0.66 0.637932
Target:  5'- gUCCUCugccuCGGCGg-CCGCgGcgCCGCGa -3'
miRNA:   3'- gAGGAG-----GCCGCgaGGCGgCuaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 42837 0.66 0.637932
Target:  5'- gUCgUCUGGCGCUUggCGCCG-UCgGCc -3'
miRNA:   3'- gAGgAGGCCGCGAG--GCGGCuAGgCGu -5'
21714 5' -62.8 NC_004812.1 + 423 0.66 0.637932
Target:  5'- uUCCgcgCgCGGCGCUCuCGCgCGcgcccgCCGCGa -3'
miRNA:   3'- gAGGa--G-GCCGCGAG-GCG-GCua----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 105405 0.66 0.637932
Target:  5'- -gCCggugCCGGCGCUCgGCgGGgcccggcgcCCGCGc -3'
miRNA:   3'- gaGGa---GGCCGCGAGgCGgCUa--------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 71539 0.66 0.637932
Target:  5'- cCUCC-CUGGCGUcguaCGCCGGggCGCAc -3'
miRNA:   3'- -GAGGaGGCCGCGag--GCGGCUagGCGU- -5'
21714 5' -62.8 NC_004812.1 + 20808 0.66 0.637932
Target:  5'- -cCCgcgUCGGCGC-CCGCCucgucaccAUCCGCGu -3'
miRNA:   3'- gaGGa--GGCCGCGaGGCGGc-------UAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 31324 0.66 0.637932
Target:  5'- uUCCgcgCgCGGCGCUCuCGCgCGcgcccgCCGCGa -3'
miRNA:   3'- gAGGa--G-GCCGCGAG-GCG-GCua----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 58211 0.66 0.637932
Target:  5'- --gCUgCGGCGCcgccccgcggCCGCCGcgCCGCc -3'
miRNA:   3'- gagGAgGCCGCGa---------GGCGGCuaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 147954 0.66 0.632092
Target:  5'- aUCCUCaucuccacgcccccgCGGCGCUCCgugcucauggcGCCGggCgGCGg -3'
miRNA:   3'- gAGGAG---------------GCCGCGAGG-----------CGGCuaGgCGU- -5'
21714 5' -62.8 NC_004812.1 + 106896 0.66 0.628198
Target:  5'- -gCCgUCCGGCGUcuacgCCGCCGAcagguaCUGCGg -3'
miRNA:   3'- gaGG-AGGCCGCGa----GGCGGCUa-----GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.