miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 5' -53.2 NC_004812.1 + 27985 0.66 0.978471
Target:  5'- -cCCGGAGAGauccccggggcguacCGCGGgGGcuGACCCGAGc -3'
miRNA:   3'- cuGGCUUUUU---------------GUGCCgCC--CUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 128487 0.66 0.978471
Target:  5'- cGCCGAGAcguCG-GGCGGGccgguccaguugccgGCCCAGGc -3'
miRNA:   3'- cUGGCUUUuu-GUgCCGCCC---------------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 6161 0.66 0.978471
Target:  5'- -gUCGggGGccuGgGCGGCGGGgguugggucgcggagGCCCGGGg -3'
miRNA:   3'- cuGGCuuUU---UgUGCCGCCC---------------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 37062 0.66 0.97847
Target:  5'- -gUCGggGGccuGgGCGGCGGGgguugggucgcggagGCCCGGGg -3'
miRNA:   3'- cuGGCuuUU---UgUGCCGCCC---------------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 61880 0.66 0.977523
Target:  5'- cGACCaGAAAgGugGCGaGgGGGAUCCAGa -3'
miRNA:   3'- -CUGG-CUUU-UugUGC-CgCCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 106683 0.66 0.977523
Target:  5'- cGGCCGGc-GGgACGGUGGcGAUCCAGc -3'
miRNA:   3'- -CUGGCUuuUUgUGCCGCC-CUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 30351 0.66 0.977523
Target:  5'- cGCCGGGAGgcgaggcgcGCGCGGCGGGGga-GGGg -3'
miRNA:   3'- cUGGCUUUU---------UGUGCCGCCCUgggUUC- -5'
21716 5' -53.2 NC_004812.1 + 102882 0.66 0.977523
Target:  5'- cACCGu-GGGCugGGacuGGGcGCCCAAGc -3'
miRNA:   3'- cUGGCuuUUUGugCCg--CCC-UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 125265 0.66 0.977523
Target:  5'- cGGCCcGGGcuCGCGGCGGGcgcGCgCGAGa -3'
miRNA:   3'- -CUGGcUUUuuGUGCCGCCC---UGgGUUC- -5'
21716 5' -53.2 NC_004812.1 + 135737 0.66 0.977523
Target:  5'- cGACCGcGAGGCcgucCGGgaGGGGCCaCGAGc -3'
miRNA:   3'- -CUGGCuUUUUGu---GCCg-CCCUGG-GUUC- -5'
21716 5' -53.2 NC_004812.1 + 65485 0.66 0.977523
Target:  5'- gGGCCGA---GCGCGcGCGG-ACCaCGGGg -3'
miRNA:   3'- -CUGGCUuuuUGUGC-CGCCcUGG-GUUC- -5'
21716 5' -53.2 NC_004812.1 + 107946 0.66 0.977523
Target:  5'- aGGCCGGccAucGCGCGGCGaGGCgCGGGa -3'
miRNA:   3'- -CUGGCU--UuuUGUGCCGCcCUGgGUUC- -5'
21716 5' -53.2 NC_004812.1 + 147749 0.66 0.977523
Target:  5'- -uCCGcgGGACGCGgggcucccGCGGGACgCGGGg -3'
miRNA:   3'- cuGGCuuUUUGUGC--------CGCCCUGgGUUC- -5'
21716 5' -53.2 NC_004812.1 + 136545 0.66 0.977523
Target:  5'- uGGCUGgcGcGCGCGacGCGGGGCCUGAu -3'
miRNA:   3'- -CUGGCuuUuUGUGC--CGCCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 48328 0.66 0.977523
Target:  5'- cGGCCGAGGccGCaACGGCGgcGGACgccgCCGAGg -3'
miRNA:   3'- -CUGGCUUUu-UG-UGCCGC--CCUG----GGUUC- -5'
21716 5' -53.2 NC_004812.1 + 41145 0.66 0.977523
Target:  5'- cACCGA--GACGCGGgGGGcuuuauuucgaGCCCcGGc -3'
miRNA:   3'- cUGGCUuuUUGUGCCgCCC-----------UGGGuUC- -5'
21716 5' -53.2 NC_004812.1 + 133955 0.66 0.977523
Target:  5'- cGCCGGccccGGGCAC-GCGGGAgccCCCGGGu -3'
miRNA:   3'- cUGGCUu---UUUGUGcCGCCCU---GGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 67397 0.66 0.977523
Target:  5'- cGCCGcc--GCGCGGagcCGGGGCCCcGGc -3'
miRNA:   3'- cUGGCuuuuUGUGCC---GCCCUGGGuUC- -5'
21716 5' -53.2 NC_004812.1 + 155859 0.66 0.977523
Target:  5'- cGCCGGGAGgcgaggcgcGCGCGGCGGGGga-GGGg -3'
miRNA:   3'- cUGGCUUUU---------UGUGCCGCCCUgggUUC- -5'
21716 5' -53.2 NC_004812.1 + 79632 0.66 0.977523
Target:  5'- cGGCCGu--GGC-CGGCGGccccGGCCCGGc -3'
miRNA:   3'- -CUGGCuuuUUGuGCCGCC----CUGGGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.