miRNA display CGI


Results 1 - 20 of 981 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21717 3' -61.6 NC_004812.1 + 68196 0.66 0.748278
Target:  5'- gCGCGCCggacgcccggccgcgCGCGGcCGgCCGGGggugcGCGggGg -3'
miRNA:   3'- gGCGCGG---------------GUGCU-GCgGGCCC-----UGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 63419 0.66 0.748278
Target:  5'- -aGCGCCCGCGAcaggaucugcaUcugggugucggccguGCUCGGGGCGGc- -3'
miRNA:   3'- ggCGCGGGUGCU-----------G---------------CGGGCCCUGCUuc -5'
21717 3' -61.6 NC_004812.1 + 93608 0.66 0.744625
Target:  5'- aCGCggcgGCCCGCGcuucCGCCCGGaa-GAAGu -3'
miRNA:   3'- gGCG----CGGGUGCu---GCGGGCCcugCUUC- -5'
21717 3' -61.6 NC_004812.1 + 149614 0.66 0.744625
Target:  5'- gCCGCGgCgauguucgUGCGACGCgaUgGGGGCGggGg -3'
miRNA:   3'- -GGCGCgG--------GUGCUGCG--GgCCCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 24105 0.66 0.744625
Target:  5'- gCCGCGgCgauguucgUGCGACGCgaUgGGGGCGggGg -3'
miRNA:   3'- -GGCGCgG--------GUGCUGCG--GgCCCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 11658 0.66 0.744625
Target:  5'- gCCGCGCaCGgGGCGUCCGccGGCGAGc -3'
miRNA:   3'- -GGCGCGgGUgCUGCGGGCc-CUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 25195 0.66 0.744625
Target:  5'- gUCGCGgCgGCucCGCCCGccggcGGACGggGu -3'
miRNA:   3'- -GGCGCgGgUGcuGCGGGC-----CCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 57232 0.66 0.744625
Target:  5'- -aGCGCCgaCACGGCGCUgCGGcucGGCGAGa -3'
miRNA:   3'- ggCGCGG--GUGCUGCGG-GCC---CUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 127590 0.66 0.744625
Target:  5'- cCCGCGUCUACcaguccucggGGCgGCCCGGGcCGc-- -3'
miRNA:   3'- -GGCGCGGGUG----------CUG-CGGGCCCuGCuuc -5'
21717 3' -61.6 NC_004812.1 + 38581 0.66 0.744625
Target:  5'- uCCGCggGUCCGCcugGCCCGGcGCGggGa -3'
miRNA:   3'- -GGCG--CGGGUGcugCGGGCCcUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 39358 0.66 0.744625
Target:  5'- -aGCGCUCgGCGG-GCCCGGGuACGccaGAGg -3'
miRNA:   3'- ggCGCGGG-UGCUgCGGGCCC-UGC---UUC- -5'
21717 3' -61.6 NC_004812.1 + 3291 0.66 0.744625
Target:  5'- cCCGgGCCCACcGCGCguccacCCGaGGAgGAGc -3'
miRNA:   3'- -GGCgCGGGUGcUGCG------GGC-CCUgCUUc -5'
21717 3' -61.6 NC_004812.1 + 95519 0.66 0.744625
Target:  5'- gCCGCcucgaCCC-CGGCggggcgGCCCGGGGCGucGc -3'
miRNA:   3'- -GGCGc----GGGuGCUG------CGGGCCCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 2628 0.66 0.744625
Target:  5'- gCCGCgGCCCaggcgcggcgGCGGCGCguCCGGGuaGAGGc -3'
miRNA:   3'- -GGCG-CGGG----------UGCUGCG--GGCCCugCUUC- -5'
21717 3' -61.6 NC_004812.1 + 25366 0.66 0.744625
Target:  5'- aCGgGCUCGcCGGCGuCCgCGGGAuCGAAc -3'
miRNA:   3'- gGCgCGGGU-GCUGC-GG-GCCCU-GCUUc -5'
21717 3' -61.6 NC_004812.1 + 128136 0.66 0.744625
Target:  5'- gCCGCgGCCCaggcgcggcgGCGGCGCguCCGGGuaGAGGc -3'
miRNA:   3'- -GGCG-CGGG----------UGCUGCG--GGCCCugCUUC- -5'
21717 3' -61.6 NC_004812.1 + 3354 0.66 0.744625
Target:  5'- cCCGCGCCC-CGGCcCCCgccGGGAa---- -3'
miRNA:   3'- -GGCGCGGGuGCUGcGGG---CCCUgcuuc -5'
21717 3' -61.6 NC_004812.1 + 8457 0.66 0.744625
Target:  5'- -aGCGCUCgGCGG-GCCCGGGuACGccaGAGg -3'
miRNA:   3'- ggCGCGGG-UGCUgCGGGCCC-UGC---UUC- -5'
21717 3' -61.6 NC_004812.1 + 51563 0.66 0.744625
Target:  5'- cCCGCGgCCggaGCGGCGCCucccaucgCGGaGGcCGGAGa -3'
miRNA:   3'- -GGCGCgGG---UGCUGCGG--------GCC-CU-GCUUC- -5'
21717 3' -61.6 NC_004812.1 + 145109 0.66 0.744625
Target:  5'- cCUGCaGCUgCGCGACGCgUCGGaGGCGAGc -3'
miRNA:   3'- -GGCG-CGG-GUGCUGCG-GGCC-CUGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.