miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 3' -63.1 NC_004812.1 + 121011 0.66 0.596692
Target:  5'- --cCGGCGCaCGCCuCGGCGGUcGCc- -3'
miRNA:   3'- acuGCCGCGaGCGG-GCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 7473 0.66 0.596692
Target:  5'- gGACcGCGCgC-CCCGGCGGCcGCg- -3'
miRNA:   3'- aCUGcCGCGaGcGGGCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 137452 0.66 0.596692
Target:  5'- cUGGgGGCGCcgccgccgCGCCCcccGCGGC-GCUGg -3'
miRNA:   3'- -ACUgCCGCGa-------GCGGGc--CGUCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 81613 0.66 0.596692
Target:  5'- aGGCGGCGgUCGaCUGGCuGgaGCa- -3'
miRNA:   3'- aCUGCCGCgAGCgGGCCGuCgaCGac -5'
21718 3' -63.1 NC_004812.1 + 25326 0.66 0.596692
Target:  5'- cGGCGaGCGCgUCGCcaccagCCGGCGGUggGCg- -3'
miRNA:   3'- aCUGC-CGCG-AGCG------GGCCGUCGa-CGac -5'
21718 3' -63.1 NC_004812.1 + 126190 0.66 0.596692
Target:  5'- --cCGGCGCUCccgcgGCCCGGCcuccucGGCgcgGCa- -3'
miRNA:   3'- acuGCCGCGAG-----CGGGCCG------UCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 682 0.66 0.596692
Target:  5'- --cCGGCGCUCccgcgGCCCGGCcuccucGGCgcgGCa- -3'
miRNA:   3'- acuGCCGCGAG-----CGGGCCG------UCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 132981 0.66 0.596692
Target:  5'- gGACcGCGCgC-CCCGGCGGCcGCg- -3'
miRNA:   3'- aCUGcCGCGaGcGGGCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 72061 0.66 0.596692
Target:  5'- cGGgGGCGCUgGgggCGGCGGCUGUUu -3'
miRNA:   3'- aCUgCCGCGAgCgg-GCCGUCGACGAc -5'
21718 3' -63.1 NC_004812.1 + 98165 0.66 0.596692
Target:  5'- gGugGGCGaCgacaGCaCCGGCGGCUccGCg- -3'
miRNA:   3'- aCugCCGC-Gag--CG-GGCCGUCGA--CGac -5'
21718 3' -63.1 NC_004812.1 + 80891 0.66 0.596692
Target:  5'- -cACGGaGC-CGCUgGcGCGGCUGCUGc -3'
miRNA:   3'- acUGCCgCGaGCGGgC-CGUCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 91007 0.66 0.595712
Target:  5'- cGuCGGCGCagUCGCCguCGGCcuccgacAGCUGCc- -3'
miRNA:   3'- aCuGCCGCG--AGCGG--GCCG-------UCGACGac -5'
21718 3' -63.1 NC_004812.1 + 105057 0.66 0.586903
Target:  5'- -cGCGuGCGCUCGCCgGGaCGGC--CUGg -3'
miRNA:   3'- acUGC-CGCGAGCGGgCC-GUCGacGAC- -5'
21718 3' -63.1 NC_004812.1 + 13844 0.66 0.586903
Target:  5'- gGGCaGCGggCGCCCGGCGGguagUGCa- -3'
miRNA:   3'- aCUGcCGCgaGCGGGCCGUCg---ACGac -5'
21718 3' -63.1 NC_004812.1 + 122440 0.66 0.586903
Target:  5'- gGGCGGCGuCUCcUCgGGCGGCggggGCg- -3'
miRNA:   3'- aCUGCCGC-GAGcGGgCCGUCGa---CGac -5'
21718 3' -63.1 NC_004812.1 + 124986 0.66 0.586903
Target:  5'- -uGCGGCGCUU-UCCGGC-GCUGgaGg -3'
miRNA:   3'- acUGCCGCGAGcGGGCCGuCGACgaC- -5'
21718 3' -63.1 NC_004812.1 + 87138 0.66 0.586903
Target:  5'- cGGCGGCGCgccagggcgUGCUCGGCcGC-GCg- -3'
miRNA:   3'- aCUGCCGCGa--------GCGGGCCGuCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 2489 0.66 0.586903
Target:  5'- cGGCGGCGgcCUCGCgggcgggcgagUCGGCGGCgcgGCc- -3'
miRNA:   3'- aCUGCCGC--GAGCG-----------GGCCGUCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 137319 0.66 0.586903
Target:  5'- cUGACGGUGCaCGCCgGGCcgggGGCccUGCc- -3'
miRNA:   3'- -ACUGCCGCGaGCGGgCCG----UCG--ACGac -5'
21718 3' -63.1 NC_004812.1 + 1464 0.66 0.586903
Target:  5'- cGGCGGCGacgccggcgucCUCGgCgGGCGGCgGCg- -3'
miRNA:   3'- aCUGCCGC-----------GAGCgGgCCGUCGaCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.