miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 5' -55.8 NC_004812.1 + 114907 0.65 0.939421
Target:  5'- uGGUGCGCaGcgaggugagguacUGGGCGAGgcacucgUCgacgaccucggcguCCGCGGCg -3'
miRNA:   3'- -CCACGUG-C-------------ACCUGCUCa------AG--------------GGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 39852 0.66 0.936575
Target:  5'- cGGUGCGgG-GGGcCGGGggCuCCGCcauGGCg -3'
miRNA:   3'- -CCACGUgCaCCU-GCUCaaG-GGCG---UCG- -5'
21720 5' -55.8 NC_004812.1 + 73231 0.66 0.936575
Target:  5'- -cUGCGgGUcGGGCGGGcggCCCGCccccaGGCg -3'
miRNA:   3'- ccACGUgCA-CCUGCUCaa-GGGCG-----UCG- -5'
21720 5' -55.8 NC_004812.1 + 4631 0.66 0.936575
Target:  5'- aGGgGCGgGgGGGCGGGacgCCCGC-GCg -3'
miRNA:   3'- -CCaCGUgCaCCUGCUCaa-GGGCGuCG- -5'
21720 5' -55.8 NC_004812.1 + 50911 0.66 0.936575
Target:  5'- --gGgGCGUGGugGGGaacgCCCGCGa- -3'
miRNA:   3'- ccaCgUGCACCugCUCaa--GGGCGUcg -5'
21720 5' -55.8 NC_004812.1 + 73758 0.66 0.936575
Target:  5'- aGGU-CACGcggGGGCGccgGGUgCCCGCGGg -3'
miRNA:   3'- -CCAcGUGCa--CCUGC---UCAaGGGCGUCg -5'
21720 5' -55.8 NC_004812.1 + 35532 0.66 0.936575
Target:  5'- aGGgGCGgGgGGGCGGGacgCCCGC-GCg -3'
miRNA:   3'- -CCaCGUgCaCCUGCUCaa-GGGCGuCG- -5'
21720 5' -55.8 NC_004812.1 + 118411 0.66 0.936092
Target:  5'- gGGUcGCggAUGUGGaccugccgggcccGCGGGUcccUCCCGCGGg -3'
miRNA:   3'- -CCA-CG--UGCACC-------------UGCUCA---AGGGCGUCg -5'
21720 5' -55.8 NC_004812.1 + 72178 0.66 0.935121
Target:  5'- gGGUGCugGgugcggccgGGggccccgggucgucGCGGGgcgUCCGCGGCc -3'
miRNA:   3'- -CCACGugCa--------CC--------------UGCUCaa-GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 67785 0.66 0.933645
Target:  5'- cGGgGCGCGggcggcuucgggggGGGCGGGc-CCgGCAGCc -3'
miRNA:   3'- -CCaCGUGCa-------------CCUGCUCaaGGgCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 45216 0.66 0.931645
Target:  5'- --aGCGCGgccgcGGACGGGUUgCCGagaaacccccuCAGCu -3'
miRNA:   3'- ccaCGUGCa----CCUGCUCAAgGGC-----------GUCG- -5'
21720 5' -55.8 NC_004812.1 + 72041 0.66 0.931645
Target:  5'- aGGagGCG-GUGGAgGGGggggcugCCCGCGGUu -3'
miRNA:   3'- -CCa-CGUgCACCUgCUCaa-----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 108355 0.66 0.931645
Target:  5'- --aGCGCGcGGACGAcGUcgCCgCGCuGCa -3'
miRNA:   3'- ccaCGUGCaCCUGCU-CAa-GG-GCGuCG- -5'
21720 5' -55.8 NC_004812.1 + 110444 0.66 0.931645
Target:  5'- cGUGgACGcucgaccugcUGGcCGAGcgCCUGCGGCc -3'
miRNA:   3'- cCACgUGC----------ACCuGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 127950 0.66 0.931645
Target:  5'- --gGCGCG-GuGCGAGUgcgccUCgCCGCGGCg -3'
miRNA:   3'- ccaCGUGCaCcUGCUCA-----AG-GGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 71837 0.66 0.931645
Target:  5'- gGGUGCgGCGgccGGGCGGccgCCCGCAc- -3'
miRNA:   3'- -CCACG-UGCa--CCUGCUcaaGGGCGUcg -5'
21720 5' -55.8 NC_004812.1 + 42821 0.66 0.931645
Target:  5'- cGGggGCugGUGGGCGcaacgaCCCGCAc- -3'
miRNA:   3'- -CCa-CGugCACCUGCucaa--GGGCGUcg -5'
21720 5' -55.8 NC_004812.1 + 142286 0.66 0.931645
Target:  5'- cGGaGCuCcUGGACGAGggCCCcgggccggcGCGGCg -3'
miRNA:   3'- -CCaCGuGcACCUGCUCaaGGG---------CGUCG- -5'
21720 5' -55.8 NC_004812.1 + 51540 0.66 0.931645
Target:  5'- cGGcGC-CGggGGGCcAGUgugcgCCCGCGGCc -3'
miRNA:   3'- -CCaCGuGCa-CCUGcUCAa----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 2442 0.66 0.931645
Target:  5'- --gGCGCG-GuGCGAGUgcgccUCgCCGCGGCg -3'
miRNA:   3'- ccaCGUGCaCcUGCUCA-----AG-GGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.