miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 5' -58.8 NC_004812.1 + 1474 0.65 0.840943
Target:  5'- gCCgGCGUCCUCGgcgggcggcggcgGAGCGCCggccggccCGCg- -3'
miRNA:   3'- -GGgUGCGGGAGCa------------CUUGCGGa-------GCGac -5'
21722 5' -58.8 NC_004812.1 + 126982 0.65 0.840943
Target:  5'- gCCgGCGUCCUCGgcgggcggcggcgGAGCGCCggccggccCGCg- -3'
miRNA:   3'- -GGgUGCGGGAGCa------------CUUGCGGa-------GCGac -5'
21722 5' -58.8 NC_004812.1 + 124881 0.66 0.836173
Target:  5'- cCCCGCGCCuCUCGgccGAGCucGCCgaggCcCUGa -3'
miRNA:   3'- -GGGUGCGG-GAGCa--CUUG--CGGa---GcGAC- -5'
21722 5' -58.8 NC_004812.1 + 151284 0.66 0.836173
Target:  5'- cCCCgggcgGCGCCC-CGgcgGAcgACGCgCUCGCg- -3'
miRNA:   3'- -GGG-----UGCGGGaGCa--CU--UGCG-GAGCGac -5'
21722 5' -58.8 NC_004812.1 + 12978 0.66 0.836173
Target:  5'- cUCCGCGCCCg---GGGcCGCgCUCGCg- -3'
miRNA:   3'- -GGGUGCGGGagcaCUU-GCG-GAGCGac -5'
21722 5' -58.8 NC_004812.1 + 15771 0.66 0.836173
Target:  5'- gCCGgGCCCUgGgcgagGAcgACGCCUCGaaGg -3'
miRNA:   3'- gGGUgCGGGAgCa----CU--UGCGGAGCgaC- -5'
21722 5' -58.8 NC_004812.1 + 94469 0.66 0.836173
Target:  5'- uCCCuggGCGCCCUCGccGGCGgUUUCGCg- -3'
miRNA:   3'- -GGG---UGCGGGAGCacUUGC-GGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 111537 0.66 0.836173
Target:  5'- aCCugGCgUUCGUGA-CGCUgcaccagcggCGCUGc -3'
miRNA:   3'- gGGugCGgGAGCACUuGCGGa---------GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 118731 0.66 0.836173
Target:  5'- aCCCgcuGCGCCgcgUUCGUGAACGacuaCUC-CUGg -3'
miRNA:   3'- -GGG---UGCGG---GAGCACUUGCg---GAGcGAC- -5'
21722 5' -58.8 NC_004812.1 + 80160 0.66 0.836173
Target:  5'- cCUCGuCGCCCUCGcgGAcaGCGCCgcggGCUa -3'
miRNA:   3'- -GGGU-GCGGGAGCa-CU--UGCGGag--CGAc -5'
21722 5' -58.8 NC_004812.1 + 59233 0.66 0.836173
Target:  5'- gCCCACGCCCgcgaccgCGgcGAGCuGCUUgGCg- -3'
miRNA:   3'- -GGGUGCGGGa------GCa-CUUG-CGGAgCGac -5'
21722 5' -58.8 NC_004812.1 + 51632 0.66 0.836173
Target:  5'- gCCCGCGgCCgCGUGcGCGCCgagaGCc- -3'
miRNA:   3'- -GGGUGCgGGaGCACuUGCGGag--CGac -5'
21722 5' -58.8 NC_004812.1 + 76308 0.66 0.836173
Target:  5'- aCCCugGCCCUUucauACGCUUCGg-- -3'
miRNA:   3'- -GGGugCGGGAGcacuUGCGGAGCgac -5'
21722 5' -58.8 NC_004812.1 + 91644 0.66 0.836173
Target:  5'- gUCCACGCCCUUGaUGAGCaucuuCC-CGCc- -3'
miRNA:   3'- -GGGUGCGGGAGC-ACUUGc----GGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 25776 0.66 0.836173
Target:  5'- cCCCgggcgGCGCCC-CGgcgGAcgACGCgCUCGCg- -3'
miRNA:   3'- -GGG-----UGCGGGaGCa--CU--UGCG-GAGCGac -5'
21722 5' -58.8 NC_004812.1 + 46429 0.66 0.828084
Target:  5'- gUCCAgGCgCUCcccUGGGCGCUggCGCUGg -3'
miRNA:   3'- -GGGUgCGgGAGc--ACUUGCGGa-GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 73033 0.66 0.828084
Target:  5'- cUCCGaGCCCUUGgaGAAgGCCgggUCGCUGc -3'
miRNA:   3'- -GGGUgCGGGAGCa-CUUgCGG---AGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 17275 0.66 0.828084
Target:  5'- gCCUcCGCCUUCGUGAaaaucucgGCGUggCUCGCc- -3'
miRNA:   3'- -GGGuGCGGGAGCACU--------UGCG--GAGCGac -5'
21722 5' -58.8 NC_004812.1 + 92207 0.66 0.828084
Target:  5'- gCCCuCGCCCUCagccuCGCCUCGg-- -3'
miRNA:   3'- -GGGuGCGGGAGcacuuGCGGAGCgac -5'
21722 5' -58.8 NC_004812.1 + 20067 0.66 0.828083
Target:  5'- cCCCGCGUCgCgcgCGccagccagcGGACGCCUCGgaGg -3'
miRNA:   3'- -GGGUGCGG-Ga--GCa--------CUUGCGGAGCgaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.