miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 5' -56.8 NC_004812.1 + 96873 0.66 0.892758
Target:  5'- gGCCgCCAggagcuGGACGUGcuGCgCUACGUCgCCg -3'
miRNA:   3'- aUGG-GGU------CCUGUAC--CG-GAUGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 71951 0.66 0.892758
Target:  5'- aGCCCCaacaaccacAGcGugGUGGCCgucuggcgcgGCGUCgCCa -3'
miRNA:   3'- aUGGGG---------UC-CugUACCGGa---------UGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 29887 0.66 0.88601
Target:  5'- aACCCCgGGGGCcgGGCCgggccggGCGUg--- -3'
miRNA:   3'- aUGGGG-UCCUGuaCCGGa------UGCAgagg -5'
21723 5' -56.8 NC_004812.1 + 109879 0.66 0.88601
Target:  5'- gACCU--GGACGUGGCuCUGCGggagCCg -3'
miRNA:   3'- aUGGGguCCUGUACCG-GAUGCaga-GG- -5'
21723 5' -56.8 NC_004812.1 + 56385 0.66 0.88601
Target:  5'- gGCUCCugaugggcgacgAGGAggcggccgcgcuCcgGGCCcACGUCUCCg -3'
miRNA:   3'- aUGGGG------------UCCU------------GuaCCGGaUGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 155395 0.66 0.88601
Target:  5'- aACCCCgGGGGCcgGGCCgggccggGCGUg--- -3'
miRNA:   3'- aUGGGG-UCCUGuaCCGGa------UGCAgagg -5'
21723 5' -56.8 NC_004812.1 + 15456 0.66 0.88601
Target:  5'- aACCgCGGcGauGCcgGGCCccaucGCGUCUCCg -3'
miRNA:   3'- aUGGgGUC-C--UGuaCCGGa----UGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 46937 0.66 0.88601
Target:  5'- -uCCCCAGGcCguGUGGCCcguccACGUagaUCCg -3'
miRNA:   3'- auGGGGUCCuG--UACCGGa----UGCAg--AGG- -5'
21723 5' -56.8 NC_004812.1 + 46452 0.66 0.885323
Target:  5'- cACCCCcgcGGGCcagGGCCUccGCGUCcgggucgucgucgUCCu -3'
miRNA:   3'- aUGGGGu--CCUGua-CCGGA--UGCAG-------------AGG- -5'
21723 5' -56.8 NC_004812.1 + 74527 0.66 0.879039
Target:  5'- cGgCCCAGGGCGUcGGCgUuCaUCUCCc -3'
miRNA:   3'- aUgGGGUCCUGUA-CCGgAuGcAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 102778 0.66 0.879039
Target:  5'- aGCCCCcccGCGUGGUCU-CGUCgCCg -3'
miRNA:   3'- aUGGGGuccUGUACCGGAuGCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 20177 0.66 0.879039
Target:  5'- gGCCCCGacccGGGCGagcgGGC--GCGUCUUCg -3'
miRNA:   3'- aUGGGGU----CCUGUa---CCGgaUGCAGAGG- -5'
21723 5' -56.8 NC_004812.1 + 15384 0.66 0.879039
Target:  5'- -uCCCCAGGGaccuggcgacCGUGGCCggggcCGUCgagcgcgCCg -3'
miRNA:   3'- auGGGGUCCU----------GUACCGGau---GCAGa------GG- -5'
21723 5' -56.8 NC_004812.1 + 41824 0.66 0.879039
Target:  5'- gACCgUAGGugcuGCAUGGCCgcgGCgGUCcCCa -3'
miRNA:   3'- aUGGgGUCC----UGUACCGGa--UG-CAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 107041 0.66 0.87833
Target:  5'- aGCCCCAGGcccugcucguacuGgAUGGCCagcGCGUCg-- -3'
miRNA:   3'- aUGGGGUCC-------------UgUACCGGa--UGCAGagg -5'
21723 5' -56.8 NC_004812.1 + 25181 0.66 0.87185
Target:  5'- cGCUCCGGGGCGgcGUCgcgGCGgCUCCg -3'
miRNA:   3'- aUGGGGUCCUGUacCGGa--UGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 31867 0.66 0.87185
Target:  5'- aGCCagCCGGGGCGgucucccccGGCCaGCGcCUCCc -3'
miRNA:   3'- aUGG--GGUCCUGUa--------CCGGaUGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 141241 0.66 0.87185
Target:  5'- -uCCCUggggAGGGCGUGGUCgcuaaggaACGcCUCCa -3'
miRNA:   3'- auGGGG----UCCUGUACCGGa-------UGCaGAGG- -5'
21723 5' -56.8 NC_004812.1 + 136920 0.66 0.87185
Target:  5'- gGCCCgAGGccgACcgGGCCgcccuCGUCcCCg -3'
miRNA:   3'- aUGGGgUCC---UGuaCCGGau---GCAGaGG- -5'
21723 5' -56.8 NC_004812.1 + 60108 0.66 0.87185
Target:  5'- --gCCCGGGGCAggguccgccgcUGGCggcgGCGUcCUCCg -3'
miRNA:   3'- augGGGUCCUGU-----------ACCGga--UGCA-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.