miRNA display CGI


Results 1 - 20 of 434 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21724 3' -62.4 NC_004812.1 + 59195 0.66 0.694452
Target:  5'- cGGGCaGGgCCCgCCGGCGUGcGGGUccaGCg -3'
miRNA:   3'- -UCUGcCUgGGGgGGCUGCAC-UCCG---CG- -5'
21724 3' -62.4 NC_004812.1 + 72833 0.66 0.694452
Target:  5'- cGACGGGCCgCUgcagUCGcUGUG-GGCGCg -3'
miRNA:   3'- uCUGCCUGGgGG----GGCuGCACuCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 153765 0.66 0.694452
Target:  5'- uGGACGccGugCCCCCCGAggaGUGGccGGC-Cg -3'
miRNA:   3'- -UCUGC--CugGGGGGGCUg--CACU--CCGcG- -5'
21724 3' -62.4 NC_004812.1 + 28257 0.66 0.694452
Target:  5'- uGGACGccGugCCCCCCGAggaGUGGccGGC-Cg -3'
miRNA:   3'- -UCUGC--CugGGGGGGCUg--CACU--CCGcG- -5'
21724 3' -62.4 NC_004812.1 + 84616 0.66 0.694452
Target:  5'- gAGACGaccgcGCCCcagCCCCGgggcGCGUGAgccucccgcGGCGCg -3'
miRNA:   3'- -UCUGCc----UGGG---GGGGC----UGCACU---------CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 54589 0.66 0.694452
Target:  5'- gAGGCGGACgagccaCCCUCG-CG-GcGGCGCc -3'
miRNA:   3'- -UCUGCCUGg-----GGGGGCuGCaCuCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 149115 0.66 0.6935
Target:  5'- gGGuuGGGCgCCCCgGuCGUccgcgcggccgccGGGGCGCg -3'
miRNA:   3'- -UCugCCUGgGGGGgCuGCA-------------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 23607 0.66 0.6935
Target:  5'- gGGuuGGGCgCCCCgGuCGUccgcgcggccgccGGGGCGCg -3'
miRNA:   3'- -UCugCCUGgGGGGgCuGCA-------------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 29116 0.66 0.69064
Target:  5'- cGGCGGGacccgcccaccccuCCCCCCCuccccccGGCGcccGGCGCg -3'
miRNA:   3'- uCUGCCU--------------GGGGGGG-------CUGCacuCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 154625 0.66 0.69064
Target:  5'- cGGCGGGacccgcccaccccuCCCCCCCuccccccGGCGcccGGCGCg -3'
miRNA:   3'- uCUGCCU--------------GGGGGGG-------CUGCacuCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 130535 0.66 0.68491
Target:  5'- gAGGCcGACgaCCCCgGGcCG-GGGGCGCg -3'
miRNA:   3'- -UCUGcCUGg-GGGGgCU-GCaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 80287 0.66 0.68491
Target:  5'- cGGCGGGagaaCCCCCaGGCG-GAcGGCGa -3'
miRNA:   3'- uCUGCCUg---GGGGGgCUGCaCU-CCGCg -5'
21724 3' -62.4 NC_004812.1 + 5026 0.66 0.68491
Target:  5'- gAGGCcGACgaCCCCgGGcCG-GGGGCGCg -3'
miRNA:   3'- -UCUGcCUGg-GGGGgCU-GCaCUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 54626 0.66 0.68491
Target:  5'- -cGCGcGACCCCCCgCGcggGCGgcGGGCGUc -3'
miRNA:   3'- ucUGC-CUGGGGGG-GC---UGCacUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 120851 0.66 0.68491
Target:  5'- cGACGccuCCCCCCUG-CGggggcuGGCGCu -3'
miRNA:   3'- uCUGCcu-GGGGGGGCuGCacu---CCGCG- -5'
21724 3' -62.4 NC_004812.1 + 34124 0.66 0.68491
Target:  5'- -cGCaGACCCCaccuuccaCCCGGCGcccgccaGGGGCGCc -3'
miRNA:   3'- ucUGcCUGGGG--------GGGCUGCa------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 133703 0.66 0.68491
Target:  5'- gGGGCGcGGCCacgCCCCCGcgcaccucgGCGUGucguuGGCGg -3'
miRNA:   3'- -UCUGC-CUGG---GGGGGC---------UGCACu----CCGCg -5'
21724 3' -62.4 NC_004812.1 + 3223 0.66 0.68491
Target:  5'- -cGCaGACCCCaccuuccaCCCGGCGcccgccaGGGGCGCc -3'
miRNA:   3'- ucUGcCUGGGG--------GGGCUGCa------CUCCGCG- -5'
21724 3' -62.4 NC_004812.1 + 36071 0.66 0.68491
Target:  5'- aGGACGGGCgaggCCCCGu--UGAGGCGg -3'
miRNA:   3'- -UCUGCCUGgg--GGGGCugcACUCCGCg -5'
21724 3' -62.4 NC_004812.1 + 90299 0.66 0.68491
Target:  5'- cGACGGGCgCCUgggcgCCGccagcCGcGAGGCGCu -3'
miRNA:   3'- uCUGCCUGgGGG-----GGCu----GCaCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.