miRNA display CGI


Results 1 - 20 of 618 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 3' -62.6 NC_004812.1 + 150990 0.65 0.657772
Target:  5'- uGCCgcgGCCCCGguucuacuacgaCGCGGCCUcgcaggaccccGCCGa -3'
miRNA:   3'- gCGGa--CGGGGCag----------GCGUUGGA-----------CGGCg -5'
21725 3' -62.6 NC_004812.1 + 140161 0.65 0.657772
Target:  5'- gGCCccGCUggaguaaaagauggCCGUCuCGCGGCCcugguuguuggugUGCCGCg -3'
miRNA:   3'- gCGGa-CGG--------------GGCAG-GCGUUGG-------------ACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 25482 0.65 0.657772
Target:  5'- uGCCgcgGCCCCGguucuacuacgaCGCGGCCUcgcaggaccccGCCGa -3'
miRNA:   3'- gCGGa--CGGGGCag----------GCGUUGGA-----------CGGCg -5'
21725 3' -62.6 NC_004812.1 + 104925 0.66 0.655826
Target:  5'- cCGCCcGCCCaucaUcugcgacacaaacagGUCCGCGGCCcgGCCGa -3'
miRNA:   3'- -GCGGaCGGG----G---------------CAGGCGUUGGa-CGGCg -5'
21725 3' -62.6 NC_004812.1 + 97040 0.66 0.651931
Target:  5'- uCGUCcGCCCCGacCCGCGagGCCcagcgaugGUCGCg -3'
miRNA:   3'- -GCGGaCGGGGCa-GGCGU--UGGa-------CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 89590 0.66 0.651931
Target:  5'- uCGCC-GCCCUG-CUGCGGgCgGCCGg -3'
miRNA:   3'- -GCGGaCGGGGCaGGCGUUgGaCGGCg -5'
21725 3' -62.6 NC_004812.1 + 57191 0.66 0.651931
Target:  5'- cCGCCggggGUCCgGUCUGUcuCCgGcCCGCg -3'
miRNA:   3'- -GCGGa---CGGGgCAGGCGuuGGaC-GGCG- -5'
21725 3' -62.6 NC_004812.1 + 1163 0.66 0.651931
Target:  5'- aGCCcgGCCCC--CCGCucCCUcGUCGCc -3'
miRNA:   3'- gCGGa-CGGGGcaGGCGuuGGA-CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 17892 0.66 0.651931
Target:  5'- aCGCCgcgGgCCCG-CCGCGcCCgcgGUCGUc -3'
miRNA:   3'- -GCGGa--CgGGGCaGGCGUuGGa--CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 55273 0.66 0.651931
Target:  5'- aCGCCcGCCuCUG-CgGCGagcGCCUGCaCGCc -3'
miRNA:   3'- -GCGGaCGG-GGCaGgCGU---UGGACG-GCG- -5'
21725 3' -62.6 NC_004812.1 + 82343 0.66 0.651931
Target:  5'- aCGCC--CCCCGUgaggcCCGCGGCCUcGCagagaCGCg -3'
miRNA:   3'- -GCGGacGGGGCA-----GGCGUUGGA-CG-----GCG- -5'
21725 3' -62.6 NC_004812.1 + 101183 0.66 0.651931
Target:  5'- gGCCUcggGUCCgGUCUGCGgggccagggGCCccgcgGCCGCc -3'
miRNA:   3'- gCGGA---CGGGgCAGGCGU---------UGGa----CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 50777 0.66 0.651931
Target:  5'- gGCCgagaugaaCCCCGcgCCGCcGCCgGCCGg -3'
miRNA:   3'- gCGGac------GGGGCa-GGCGuUGGaCGGCg -5'
21725 3' -62.6 NC_004812.1 + 129907 0.66 0.651931
Target:  5'- gCGCCUGCguggaUCCGUCgccgccuaCGCAGCC--CCGCc -3'
miRNA:   3'- -GCGGACG-----GGGCAG--------GCGUUGGacGGCG- -5'
21725 3' -62.6 NC_004812.1 + 83385 0.66 0.651931
Target:  5'- cCGCCcGCCCgacCCGCAggGCg-GCCGCg -3'
miRNA:   3'- -GCGGaCGGGgcaGGCGU--UGgaCGGCG- -5'
21725 3' -62.6 NC_004812.1 + 98182 0.66 0.651931
Target:  5'- cCGgCgGCUCCGcggCCGCuuCCaucgGCCGCg -3'
miRNA:   3'- -GCgGaCGGGGCa--GGCGuuGGa---CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 130231 0.66 0.651931
Target:  5'- aGC--GCgCCCGaCCaaaCAGCCUGCCGCu -3'
miRNA:   3'- gCGgaCG-GGGCaGGc--GUUGGACGGCG- -5'
21725 3' -62.6 NC_004812.1 + 126672 0.66 0.651931
Target:  5'- aGCCcgGCCCC--CCGCucCCUcGUCGCc -3'
miRNA:   3'- gCGGa-CGGGGcaGGCGuuGGA-CGGCG- -5'
21725 3' -62.6 NC_004812.1 + 57075 0.66 0.651931
Target:  5'- cCGCCccGCCCUgGUCCcCAAgcuCCUGgCGCg -3'
miRNA:   3'- -GCGGa-CGGGG-CAGGcGUU---GGACgGCG- -5'
21725 3' -62.6 NC_004812.1 + 77194 0.66 0.650957
Target:  5'- cCGCCgGgCUCGaaCGCGGCCUcgcucucgagcucGCCGCg -3'
miRNA:   3'- -GCGGaCgGGGCagGCGUUGGA-------------CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.