miRNA display CGI


Results 1 - 20 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21725 5' -54.3 NC_004812.1 + 82713 0.66 0.964724
Target:  5'- -gGCG-CGAC-UCGGCGgCCGCG-GCc -3'
miRNA:   3'- gaUGCuGUUGaAGCCGC-GGUGCuCGc -5'
21725 5' -54.3 NC_004812.1 + 15140 0.66 0.964724
Target:  5'- -gACGGCGACgUCGcagcCGUCGcCGAGCGa -3'
miRNA:   3'- gaUGCUGUUGaAGCc---GCGGU-GCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 155894 0.66 0.964724
Target:  5'- -gGCGACcGCgcCGGCGCCGacgccgacgGAGCu -3'
miRNA:   3'- gaUGCUGuUGaaGCCGCGGUg--------CUCGc -5'
21725 5' -54.3 NC_004812.1 + 43398 0.66 0.964724
Target:  5'- gCUGCuGCGugUggUCGGaguCGaCCACGAGCGc -3'
miRNA:   3'- -GAUGcUGUugA--AGCC---GC-GGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 76516 0.66 0.964724
Target:  5'- -gGCGGCGACggugUCGGCgaggacGCCcUGGGCc -3'
miRNA:   3'- gaUGCUGUUGa---AGCCG------CGGuGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 73344 0.66 0.964724
Target:  5'- gUGCGGCGAg--CGGCGCCcCG-GCc -3'
miRNA:   3'- gAUGCUGUUgaaGCCGCGGuGCuCGc -5'
21725 5' -54.3 NC_004812.1 + 110422 0.66 0.964724
Target:  5'- gUGCG-CGACUUCcuguuGGUGgaCACGGGCGu -3'
miRNA:   3'- gAUGCuGUUGAAG-----CCGCg-GUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 146846 0.66 0.964724
Target:  5'- -cGCGGCcGCcggcGCGCCGCGGGCc -3'
miRNA:   3'- gaUGCUGuUGaagcCGCGGUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 81678 0.66 0.964724
Target:  5'- -cGCGACGGCUcccccgacccgcUCGcGCGCCugcACGcGCGc -3'
miRNA:   3'- gaUGCUGUUGA------------AGC-CGCGG---UGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 129138 0.66 0.964724
Target:  5'- -cGCGcCGGCgggcgcgCGGCGCCGCccGCGu -3'
miRNA:   3'- gaUGCuGUUGaa-----GCCGCGGUGcuCGC- -5'
21725 5' -54.3 NC_004812.1 + 117162 0.66 0.964724
Target:  5'- aUGCGGCuauaaaucACgggCGGuCGCCGCG-GCGa -3'
miRNA:   3'- gAUGCUGu-------UGaa-GCC-GCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 79678 0.66 0.964724
Target:  5'- gCUGCGcccgcucccCGACUUCGGgggGCUGCGGGUGg -3'
miRNA:   3'- -GAUGCu--------GUUGAAGCCg--CGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 148063 0.66 0.964724
Target:  5'- aUGCGGCuauaaaucACgggCGGuCGCCGCG-GCGa -3'
miRNA:   3'- gAUGCUGu-------UGaa-GCC-GCGGUGCuCGC- -5'
21725 5' -54.3 NC_004812.1 + 3630 0.66 0.964724
Target:  5'- -cGCGcCGGCgggcgcgCGGCGCCGCccGCGu -3'
miRNA:   3'- gaUGCuGUUGaa-----GCCGCGGUGcuCGC- -5'
21725 5' -54.3 NC_004812.1 + 124993 0.66 0.964724
Target:  5'- -gGCGACcGCgcCGGCGCCGacgccgacgGAGCu -3'
miRNA:   3'- gaUGCUGuUGaaGCCGCGGUg--------CUCGc -5'
21725 5' -54.3 NC_004812.1 + 114971 0.66 0.964724
Target:  5'- -gGCGACGucgGCcUCGGCGCUGacgucaGGGUGg -3'
miRNA:   3'- gaUGCUGU---UGaAGCCGCGGUg-----CUCGC- -5'
21725 5' -54.3 NC_004812.1 + 65066 0.66 0.964724
Target:  5'- -cGCGGguAC-UCGGCGgaCGCGGGCu -3'
miRNA:   3'- gaUGCUguUGaAGCCGCg-GUGCUCGc -5'
21725 5' -54.3 NC_004812.1 + 89369 0.66 0.964724
Target:  5'- -gGCGACcguGCUcaagcaCGGUcgcaGCCGCGGGCGc -3'
miRNA:   3'- gaUGCUGu--UGAa-----GCCG----CGGUGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 40061 0.66 0.964724
Target:  5'- -cGCGGCcGC-UCGuGCGCUuuuccgggcgGCGGGCGg -3'
miRNA:   3'- gaUGCUGuUGaAGC-CGCGG----------UGCUCGC- -5'
21725 5' -54.3 NC_004812.1 + 136098 0.66 0.964724
Target:  5'- -cACGACGACgggGGUGCCcAgGGGCu -3'
miRNA:   3'- gaUGCUGUUGaagCCGCGG-UgCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.