miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 3' -54.8 NC_004812.1 + 94102 0.66 0.947201
Target:  5'- --aCGGCGGGG-GCGaAUCcgGCGGGCg -3'
miRNA:   3'- cacGCCGCUCUaCGCgUAGa-UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 143954 0.66 0.947201
Target:  5'- -cGgGGUGGGAggaGCGCGgg-AUGGGCa -3'
miRNA:   3'- caCgCCGCUCUa--CGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 3759 0.66 0.947201
Target:  5'- -aGCGGCGcGGcgGCGCcggCgACGAGg -3'
miRNA:   3'- caCGCCGC-UCuaCGCGua-GaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 74068 0.66 0.947201
Target:  5'- -aGCGGCGGGc-GCGC----GCGGGCc -3'
miRNA:   3'- caCGCCGCUCuaCGCGuagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 87050 0.66 0.947201
Target:  5'- cUGCGGCGcGGccgGCGCc---GCGGGCa -3'
miRNA:   3'- cACGCCGCuCUa--CGCGuagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152649 0.66 0.947201
Target:  5'- -cGCGGCGGGGggGCGC-----CGGGCc -3'
miRNA:   3'- caCGCCGCUCUa-CGCGuagauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 73221 0.66 0.947201
Target:  5'- -cGCGGCcgcccUGCGgGUCggGCGGGCg -3'
miRNA:   3'- caCGCCGcucu-ACGCgUAGa-UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 152346 0.66 0.947201
Target:  5'- -gGCGcGCGAGAacgcCGCcgCgGCGGGCg -3'
miRNA:   3'- caCGC-CGCUCUac--GCGuaGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 122814 0.66 0.947201
Target:  5'- -gGCuGUGGGcgGCGCA---GCGGGCg -3'
miRNA:   3'- caCGcCGCUCuaCGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 145287 0.66 0.947201
Target:  5'- --uCGGgGGGGUGUGCGgugugGCGGGCc -3'
miRNA:   3'- cacGCCgCUCUACGCGUaga--UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 85852 0.66 0.947201
Target:  5'- gGUGUGGCGAccgggcGAgugGCGgGUCUGCuccugaggGGGCc -3'
miRNA:   3'- -CACGCCGCU------CUa--CGCgUAGAUG--------CUCG- -5'
21726 3' -54.8 NC_004812.1 + 129267 0.66 0.947201
Target:  5'- -aGCGGCGcGGcgGCGCcggCgACGAGg -3'
miRNA:   3'- caCGCCGC-UCuaCGCGua-GaUGCUCg -5'
21726 3' -54.8 NC_004812.1 + 102945 0.66 0.947201
Target:  5'- -gGUGGaCGAGAUGCuGCG-CgcCGAGUa -3'
miRNA:   3'- caCGCC-GCUCUACG-CGUaGauGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 26838 0.66 0.947201
Target:  5'- -gGCGcGCGAGAacgcCGCcgCgGCGGGCg -3'
miRNA:   3'- caCGC-CGCUCUac--GCGuaGaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 110640 0.66 0.946764
Target:  5'- -cGCGG-GGGAgcUGCGCGUgCUGCacagccuGGGCg -3'
miRNA:   3'- caCGCCgCUCU--ACGCGUA-GAUG-------CUCG- -5'
21726 3' -54.8 NC_004812.1 + 6755 0.66 0.944541
Target:  5'- aGUGgGGgGugaaaggacaaaaaaAGAUGCGCGcggGCGAGCc -3'
miRNA:   3'- -CACgCCgC---------------UCUACGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 37656 0.66 0.944541
Target:  5'- aGUGgGGgGugaaaggacaaaaaaAGAUGCGCGcggGCGAGCc -3'
miRNA:   3'- -CACgCCgC---------------UCUACGCGUagaUGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 105188 0.66 0.942719
Target:  5'- -gGUGGCGGGGcggagGCGgGUgguggGCGAGCg -3'
miRNA:   3'- caCGCCGCUCUa----CGCgUAga---UGCUCG- -5'
21726 3' -54.8 NC_004812.1 + 88947 0.66 0.942719
Target:  5'- -gGUGGCGAGGaggGCGCGgccgGCG-GCc -3'
miRNA:   3'- caCGCCGCUCUa--CGCGUaga-UGCuCG- -5'
21726 3' -54.8 NC_004812.1 + 30058 0.66 0.942719
Target:  5'- -aGgGGgGAGggGCGCGc--GCGGGCg -3'
miRNA:   3'- caCgCCgCUCuaCGCGUagaUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.