miRNA display CGI


Results 1 - 20 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21726 5' -62.7 NC_004812.1 + 21149 0.66 0.640959
Target:  5'- ---gCCGCGGCggggGUCuCGGcGUGCCGCg -3'
miRNA:   3'- ggugGGCGUCGa---CGG-GCU-CACGGCGa -5'
21726 5' -62.7 NC_004812.1 + 43158 0.66 0.640959
Target:  5'- uCCGCgacaCCGCGGCgGCCCGGGcGuuGg- -3'
miRNA:   3'- -GGUG----GGCGUCGaCGGGCUCaCggCga -5'
21726 5' -62.7 NC_004812.1 + 26479 0.66 0.640959
Target:  5'- gCGCCCGUgugGGC-GCCCGAGcuggGCgaCGCg -3'
miRNA:   3'- gGUGGGCG---UCGaCGGGCUCa---CG--GCGa -5'
21726 5' -62.7 NC_004812.1 + 47104 0.66 0.640959
Target:  5'- aCGCCaCGCGGgUGUgCGGGacGCUGCUg -3'
miRNA:   3'- gGUGG-GCGUCgACGgGCUCa-CGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 114666 0.66 0.640959
Target:  5'- aCCAUcaagagcgggCCGguGCcgggcgcGCCCGGG-GCCGCg -3'
miRNA:   3'- -GGUG----------GGCguCGa------CGGGCUCaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 123949 0.66 0.640959
Target:  5'- uCCuCCCGCgcgAGCccaGCCCGGGgggGCUGUUc -3'
miRNA:   3'- -GGuGGGCG---UCGa--CGGGCUCa--CGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 63720 0.66 0.640959
Target:  5'- cCCACaCGC-GCUGCCgGAGcgugcGCUGCg -3'
miRNA:   3'- -GGUGgGCGuCGACGGgCUCa----CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 151619 0.66 0.640959
Target:  5'- cCCGCCCuGCGGCgcacgGCCCcccgGCgCGCa -3'
miRNA:   3'- -GGUGGG-CGUCGa----CGGGcucaCG-GCGa -5'
21726 5' -62.7 NC_004812.1 + 46559 0.66 0.640959
Target:  5'- -gGCCCG-AGC--CCCGGGUcGCCGCg -3'
miRNA:   3'- ggUGGGCgUCGacGGGCUCA-CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 27185 0.66 0.640959
Target:  5'- gCCGCCgCGCGGC--CCCGcc-GCCGCg -3'
miRNA:   3'- -GGUGG-GCGUCGacGGGCucaCGGCGa -5'
21726 5' -62.7 NC_004812.1 + 101979 0.66 0.640959
Target:  5'- aCGCCCGCcGCccGCgCGGGggGUCGCg -3'
miRNA:   3'- gGUGGGCGuCGa-CGgGCUCa-CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 74249 0.66 0.640959
Target:  5'- gCGCCCGCAGgUacGCCuCGccccgGCCGCg -3'
miRNA:   3'- gGUGGGCGUCgA--CGG-GCuca--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 120718 0.66 0.640959
Target:  5'- cCCGCCCuGCGGCgcacgGCCCcccgGCgCGCa -3'
miRNA:   3'- -GGUGGG-CGUCGa----CGGGcucaCG-GCGa -5'
21726 5' -62.7 NC_004812.1 + 151987 0.66 0.640959
Target:  5'- gCGCCCGUgugGGC-GCCCGAGcuggGCgaCGCg -3'
miRNA:   3'- gGUGGGCG---UCGaCGGGCUCa---CG--GCGa -5'
21726 5' -62.7 NC_004812.1 + 106490 0.66 0.640959
Target:  5'- -aACCCGUGGCUgggGCgCGGGU-CCGCg -3'
miRNA:   3'- ggUGGGCGUCGA---CGgGCUCAcGGCGa -5'
21726 5' -62.7 NC_004812.1 + 80355 0.66 0.631167
Target:  5'- -gGCCCGCacAGCcggGCCCGuGUgguguuuccGCCGCc -3'
miRNA:   3'- ggUGGGCG--UCGa--CGGGCuCA---------CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 92770 0.66 0.631167
Target:  5'- gCCGCCCGCGGC-GUUCa--UGUCGCUg -3'
miRNA:   3'- -GGUGGGCGUCGaCGGGcucACGGCGA- -5'
21726 5' -62.7 NC_004812.1 + 74863 0.66 0.631167
Target:  5'- aCAUCgaGCAGCUGCUccgCGAGcUGCaCGCg -3'
miRNA:   3'- gGUGGg-CGUCGACGG---GCUC-ACG-GCGa -5'
21726 5' -62.7 NC_004812.1 + 1398 0.66 0.631167
Target:  5'- cCCGCUcuuCGCGGCccgGcCCCGAcGgcgGCCGCg -3'
miRNA:   3'- -GGUGG---GCGUCGa--C-GGGCU-Ca--CGGCGa -5'
21726 5' -62.7 NC_004812.1 + 120872 0.66 0.631167
Target:  5'- cCCGgcCCCGCAGggGgCUGGGUcgggGCCGCg -3'
miRNA:   3'- -GGU--GGGCGUCgaCgGGCUCA----CGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.