miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 3' -64 NC_004812.1 + 156503 0.66 0.584841
Target:  5'- gGCGGGCUCccgGCccCGCGCGcGCcccggcccGUCCCUc -3'
miRNA:   3'- -UGCCUGGGa--CGa-GCGCGC-CG--------CAGGGA- -5'
21727 3' -64 NC_004812.1 + 150563 0.66 0.584841
Target:  5'- cGCGGugUCgauaGC-CGCGCGGCGgcgggCuCCUc -3'
miRNA:   3'- -UGCCugGGa---CGaGCGCGCCGCa----G-GGA- -5'
21727 3' -64 NC_004812.1 + 125602 0.66 0.584841
Target:  5'- gGCGGGCUCccgGCccCGCGCGcGCcccggcccGUCCCUc -3'
miRNA:   3'- -UGCCUGGGa--CGa-GCGCGC-CG--------CAGGGA- -5'
21727 3' -64 NC_004812.1 + 93 0.66 0.584841
Target:  5'- gGCGGGCUCccgGCccCGCGCGcGCcccggcccGUCCCUc -3'
miRNA:   3'- -UGCCUGGGa--CGa-GCGCGC-CG--------CAGGGA- -5'
21727 3' -64 NC_004812.1 + 25054 0.66 0.584841
Target:  5'- cGCGGugUCgauaGC-CGCGCGGCGgcgggCuCCUc -3'
miRNA:   3'- -UGCCugGGa---CGaGCGCGCCGCa----G-GGA- -5'
21727 3' -64 NC_004812.1 + 135967 0.66 0.584841
Target:  5'- -gGGAgCCUGCUCucggaggaggcgGUGCGGCGcgugacggacgCCCUg -3'
miRNA:   3'- ugCCUgGGACGAG------------CGCGCCGCa----------GGGA- -5'
21727 3' -64 NC_004812.1 + 124901 0.66 0.581002
Target:  5'- -aGGACCCccgGC-CGgGCGGCGgcgggggcggcggCCCa -3'
miRNA:   3'- ugCCUGGGa--CGaGCgCGCCGCa------------GGGa -5'
21727 3' -64 NC_004812.1 + 155802 0.66 0.581002
Target:  5'- -aGGACCCccgGC-CGgGCGGCGgcgggggcggcggCCCa -3'
miRNA:   3'- ugCCUGGGa--CGaGCgCGCCGCa------------GGGa -5'
21727 3' -64 NC_004812.1 + 29537 0.66 0.575253
Target:  5'- -gGGACCCgggcgGCUCGCGC-GCGUa--- -3'
miRNA:   3'- ugCCUGGGa----CGAGCGCGcCGCAggga -5'
21727 3' -64 NC_004812.1 + 155045 0.66 0.575253
Target:  5'- -gGGACCCgggcgGCUCGCGC-GCGUa--- -3'
miRNA:   3'- ugCCUGGGa----CGAGCGCGcCGCAggga -5'
21727 3' -64 NC_004812.1 + 126543 0.66 0.575253
Target:  5'- -aGGGCCCggccGCcCGCGCG-CGcCCCUc -3'
miRNA:   3'- ugCCUGGGa---CGaGCGCGCcGCaGGGA- -5'
21727 3' -64 NC_004812.1 + 57104 0.66 0.575253
Target:  5'- cGCGGACCCcGUUCaaGaaCGGCG-CCCa -3'
miRNA:   3'- -UGCCUGGGaCGAGcgC--GCCGCaGGGa -5'
21727 3' -64 NC_004812.1 + 72176 0.66 0.575253
Target:  5'- gGCGGACCCggaacccccUUCGCGCGaGCucuUCCCc -3'
miRNA:   3'- -UGCCUGGGac-------GAGCGCGC-CGc--AGGGa -5'
21727 3' -64 NC_004812.1 + 74231 0.66 0.575253
Target:  5'- -aGGACgCCUGCgagaaggCGCaCGcGCGUCUCUg -3'
miRNA:   3'- ugCCUG-GGACGa------GCGcGC-CGCAGGGA- -5'
21727 3' -64 NC_004812.1 + 143986 0.66 0.575253
Target:  5'- gGCGccGACC--GCUCGCgGCGGCGUCUUc -3'
miRNA:   3'- -UGC--CUGGgaCGAGCG-CGCCGCAGGGa -5'
21727 3' -64 NC_004812.1 + 1034 0.66 0.575253
Target:  5'- -aGGGCCCggccGCcCGCGCG-CGcCCCUc -3'
miRNA:   3'- ugCCUGGGa---CGaGCGCGCcGCaGGGA- -5'
21727 3' -64 NC_004812.1 + 80265 0.66 0.575253
Target:  5'- cGCGGACCUggcggugGCg-GUGCGGCGggagaaccCCCa -3'
miRNA:   3'- -UGCCUGGGa------CGagCGCGCCGCa-------GGGa -5'
21727 3' -64 NC_004812.1 + 124414 0.66 0.574296
Target:  5'- aGCGGGCCgUGCUgGaCGUGGCccggaggcacccgGUCCg- -3'
miRNA:   3'- -UGCCUGGgACGAgC-GCGCCG-------------CAGGga -5'
21727 3' -64 NC_004812.1 + 128840 0.66 0.574296
Target:  5'- gGCGGGcugggccgcccgcCCCUGCgggcCGCG-GGCGgCCCg -3'
miRNA:   3'- -UGCCU-------------GGGACGa---GCGCgCCGCaGGGa -5'
21727 3' -64 NC_004812.1 + 137462 0.66 0.574296
Target:  5'- cUGGGCgacuucggcgccgCCUGCuUCGCGCGGgGcUCCUg -3'
miRNA:   3'- uGCCUG-------------GGACG-AGCGCGCCgC-AGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.