miRNA display CGI


Results 1 - 20 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21727 5' -55.5 NC_004812.1 + 74260 0.66 0.942881
Target:  5'- cUCuGCGAgGCCGCGGgccucacggGGGgcGUCCuGAg -3'
miRNA:   3'- -GGuCGCUgCGGCGCUa--------CCU--UAGGuCU- -5'
21727 5' -55.5 NC_004812.1 + 138390 0.66 0.942881
Target:  5'- uCgAGCGGCGCCucgacGCGGaguacuggGGggUCgCGGAg -3'
miRNA:   3'- -GgUCGCUGCGG-----CGCUa-------CCuuAG-GUCU- -5'
21727 5' -55.5 NC_004812.1 + 76712 0.66 0.942881
Target:  5'- aCCuccGCGAaGuuGgGGUGGAggCCGGAg -3'
miRNA:   3'- -GGu--CGCUgCggCgCUACCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 100371 0.66 0.942881
Target:  5'- uCCGGCGccCGCCGCcGggGGGcgCgAGGc -3'
miRNA:   3'- -GGUCGCu-GCGGCG-CuaCCUuaGgUCU- -5'
21727 5' -55.5 NC_004812.1 + 19560 0.66 0.942429
Target:  5'- gUCAGCGACGCgGCcGAcgcgcacUGGGguguGUCCuGGAu -3'
miRNA:   3'- -GGUCGCUGCGgCG-CU-------ACCU----UAGG-UCU- -5'
21727 5' -55.5 NC_004812.1 + 38829 0.66 0.942429
Target:  5'- gCGGCGcGCGCCGgcgcggcCGggGGGcgcGUCCGGGg -3'
miRNA:   3'- gGUCGC-UGCGGC-------GCuaCCU---UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 80356 0.66 0.942429
Target:  5'- gCGGCGcGCGCgggccuggccgccUGCGAgggGGAGUUCGGGg -3'
miRNA:   3'- gGUCGC-UGCG-------------GCGCUa--CCUUAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 7928 0.66 0.942429
Target:  5'- gCGGCGcGCGCCGgcgcggcCGggGGGcgcGUCCGGGg -3'
miRNA:   3'- gGUCGC-UGCGGC-------GCuaCCU---UAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 8634 0.66 0.942429
Target:  5'- cCCGGCGccaugagcacggaGCGCCGCGggGGcGUggAGAu -3'
miRNA:   3'- -GGUCGC-------------UGCGGCGCuaCCuUAggUCU- -5'
21727 5' -55.5 NC_004812.1 + 100540 0.66 0.942429
Target:  5'- gCGGCGAggccgccgucgaaCGCCGCGgcGGAGaggcaggCCAGc -3'
miRNA:   3'- gGUCGCU-------------GCGGCGCuaCCUUa------GGUCu -5'
21727 5' -55.5 NC_004812.1 + 22973 0.66 0.942429
Target:  5'- aCGGCGACGCUgaugcugGCGGUGGccgCCu-- -3'
miRNA:   3'- gGUCGCUGCGG-------CGCUACCuuaGGucu -5'
21727 5' -55.5 NC_004812.1 + 91454 0.66 0.940132
Target:  5'- gCCGGUGggcguccacgaggacGCGCC-CGAaGGcGUCCAGAc -3'
miRNA:   3'- -GGUCGC---------------UGCGGcGCUaCCuUAGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 155903 0.66 0.938253
Target:  5'- gCCGGCGcccggGCuGCCGCGccgaGGAggCCGGGc -3'
miRNA:   3'- -GGUCGC-----UG-CGGCGCua--CCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 30395 0.66 0.938253
Target:  5'- gCCGGCGcccggGCuGCCGCGccgaGGAggCCGGGc -3'
miRNA:   3'- -GGUCGC-----UG-CGGCGCua--CCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 124412 0.66 0.938253
Target:  5'- gCAGCGG-GCCGUGcUGGAcguggcCCGGAg -3'
miRNA:   3'- gGUCGCUgCGGCGCuACCUua----GGUCU- -5'
21727 5' -55.5 NC_004812.1 + 25909 0.66 0.938253
Target:  5'- cCCAGCGccgcgggcgcGCGUCGCGA--GAG-CCGGAc -3'
miRNA:   3'- -GGUCGC----------UGCGGCGCUacCUUaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 100831 0.66 0.938253
Target:  5'- -gGGCgGGCGCCGCGAcgccgGGGAgggCgAGGa -3'
miRNA:   3'- ggUCG-CUGCGGCGCUa----CCUUa--GgUCU- -5'
21727 5' -55.5 NC_004812.1 + 37205 0.66 0.938253
Target:  5'- -gAGCGGCGCCcccgggcacGCGggGGGccCCGGGc -3'
miRNA:   3'- ggUCGCUGCGG---------CGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 6304 0.66 0.938253
Target:  5'- -gAGCGGCGCCcccgggcacGCGggGGGccCCGGGc -3'
miRNA:   3'- ggUCGCUGCGG---------CGCuaCCUuaGGUCU- -5'
21727 5' -55.5 NC_004812.1 + 111558 0.66 0.938253
Target:  5'- aCCAGCGGCGCUGCauguucggcGUGGugagcCCGGc -3'
miRNA:   3'- -GGUCGCUGCGGCGc--------UACCuua--GGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.