miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 3' -56 NC_004812.1 + 45159 0.66 0.924823
Target:  5'- aCGAGCGA-GCgg-GGGUUCCAGAc-- -3'
miRNA:   3'- -GUUCGCUcCGaggCCCAAGGUCUagg -5'
21728 3' -56 NC_004812.1 + 97869 0.66 0.924823
Target:  5'- --uGCGcGGGCccgCCGGGUUCCugcucaagcAGuUCCa -3'
miRNA:   3'- guuCGC-UCCGa--GGCCCAAGG---------UCuAGG- -5'
21728 3' -56 NC_004812.1 + 98542 0.66 0.924823
Target:  5'- --cGCGGccucGGCgCCGGGcgCCGGggCCc -3'
miRNA:   3'- guuCGCU----CCGaGGCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 138237 0.66 0.924823
Target:  5'- aCGAuGUGGGGC-CCGcGGgcCCGGcgCCg -3'
miRNA:   3'- -GUU-CGCUCCGaGGC-CCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 130176 0.66 0.924823
Target:  5'- gGGGaCGAGGaCgagaaCGGGgaUCGGAUCCg -3'
miRNA:   3'- gUUC-GCUCC-Gag---GCCCaaGGUCUAGG- -5'
21728 3' -56 NC_004812.1 + 49741 0.66 0.924823
Target:  5'- --cGCGAucuuCgagCCGGGUUCCAGGaCCa -3'
miRNA:   3'- guuCGCUcc--Ga--GGCCCAAGGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 58976 0.66 0.924823
Target:  5'- gCGGGCGGGGgUCgCGGGU--CGGGUUa -3'
miRNA:   3'- -GUUCGCUCCgAG-GCCCAagGUCUAGg -5'
21728 3' -56 NC_004812.1 + 11308 0.66 0.924823
Target:  5'- --cGCGGGGCgCCGcGGggCgGGggCCg -3'
miRNA:   3'- guuCGCUCCGaGGC-CCaaGgUCuaGG- -5'
21728 3' -56 NC_004812.1 + 26393 0.66 0.919882
Target:  5'- uCGGGCGc-GCUUCGGGgaucgcccgugggggUCgCGGAUCCg -3'
miRNA:   3'- -GUUCGCucCGAGGCCCa--------------AG-GUCUAGG- -5'
21728 3' -56 NC_004812.1 + 27661 0.66 0.919321
Target:  5'- aGGGCGGGGUUcaccugaaacaCCGGGcUgCAGAgCCg -3'
miRNA:   3'- gUUCGCUCCGA-----------GGCCCaAgGUCUaGG- -5'
21728 3' -56 NC_004812.1 + 137490 0.66 0.919321
Target:  5'- --cGCGGGGCUCCuGGUcaaccCCGGcgCa -3'
miRNA:   3'- guuCGCUCCGAGGcCCAa----GGUCuaGg -5'
21728 3' -56 NC_004812.1 + 47936 0.66 0.919321
Target:  5'- -cAGCGGccGGC-CCGGcgcgcGUUCCcGGAUCCu -3'
miRNA:   3'- guUCGCU--CCGaGGCC-----CAAGG-UCUAGG- -5'
21728 3' -56 NC_004812.1 + 8368 0.66 0.913583
Target:  5'- --cGCGucGGCggccgCCGGGgcCCGgGGUCCg -3'
miRNA:   3'- guuCGCu-CCGa----GGCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 50980 0.66 0.913583
Target:  5'- -cGGCGuGGUguuUCCGGGccCCAG-UCCc -3'
miRNA:   3'- guUCGCuCCG---AGGCCCaaGGUCuAGG- -5'
21728 3' -56 NC_004812.1 + 32185 0.66 0.913583
Target:  5'- gCGGGCGGGcGgUCCGaGGgcggUCCGagggcGGUCCg -3'
miRNA:   3'- -GUUCGCUC-CgAGGC-CCa---AGGU-----CUAGG- -5'
21728 3' -56 NC_004812.1 + 84958 0.66 0.913583
Target:  5'- uGGGgGAGGCguggggCCGGGUguuggaggCCucgacgaugGGGUCCu -3'
miRNA:   3'- gUUCgCUCCGa-----GGCCCAa-------GG---------UCUAGG- -5'
21728 3' -56 NC_004812.1 + 123506 0.66 0.913583
Target:  5'- cCGGGcCGGGGCUCCaaggccgcgagaGGGcUCCAugGGUUCg -3'
miRNA:   3'- -GUUC-GCUCCGAGG------------CCCaAGGU--CUAGG- -5'
21728 3' -56 NC_004812.1 + 142557 0.66 0.913583
Target:  5'- gAGGCGGGGCuUCUGGG--CCGGcaCCu -3'
miRNA:   3'- gUUCGCUCCG-AGGCCCaaGGUCuaGG- -5'
21728 3' -56 NC_004812.1 + 39269 0.66 0.913583
Target:  5'- --cGCGucGGCggccgCCGGGgcCCGgGGUCCg -3'
miRNA:   3'- guuCGCu-CCGa----GGCCCaaGGU-CUAGG- -5'
21728 3' -56 NC_004812.1 + 154407 0.66 0.913583
Target:  5'- cCGGGcCGGGGCUCCaaggccgcgagaGGGcUCCAugGGUUCg -3'
miRNA:   3'- -GUUC-GCUCCGAGG------------CCCaAGGU--CUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.