miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21728 5' -61.3 NC_004812.1 + 96095 0.66 0.764716
Target:  5'- uCGAGGGCGaGCCguucggggccaccugCGUGG-CCGCCa- -3'
miRNA:   3'- cGCUUCCGCcUGG---------------GCACCaGGCGGcc -5'
21728 5' -61.3 NC_004812.1 + 19892 0.66 0.761131
Target:  5'- cGCGgcGGCGGgggacgcggcgGCCCGcg--CCGCCGc -3'
miRNA:   3'- -CGCuuCCGCC-----------UGGGCaccaGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 104047 0.66 0.761131
Target:  5'- uCGAGGGCcucGGGgaCGUGGgCCGCgCGGu -3'
miRNA:   3'- cGCUUCCG---CCUggGCACCaGGCG-GCC- -5'
21728 5' -61.3 NC_004812.1 + 61104 0.66 0.761131
Target:  5'- gGUcGAGGCGGcgcCCCGcGG-CgCGCCGGc -3'
miRNA:   3'- -CGcUUCCGCCu--GGGCaCCaG-GCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 68850 0.66 0.761131
Target:  5'- uGCGggGGUaGACUCGcccgcgucGGUCCGCgGc -3'
miRNA:   3'- -CGCuuCCGcCUGGGCa-------CCAGGCGgCc -5'
21728 5' -61.3 NC_004812.1 + 83208 0.66 0.761131
Target:  5'- cGCGgcGGCcgcgcucggGGGCCUcgGUGGcCC-CCGGg -3'
miRNA:   3'- -CGCuuCCG---------CCUGGG--CACCaGGcGGCC- -5'
21728 5' -61.3 NC_004812.1 + 108254 0.66 0.761131
Target:  5'- gGCGuccgcGGCGGAgccCUCGgcgGcGUCCGCCGc -3'
miRNA:   3'- -CGCuu---CCGCCU---GGGCa--C-CAGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 64684 0.66 0.761131
Target:  5'- aGCGcuGGauGACCC-UGGaCCGCCuGGa -3'
miRNA:   3'- -CGCuuCCgcCUGGGcACCaGGCGG-CC- -5'
21728 5' -61.3 NC_004812.1 + 106162 0.66 0.761131
Target:  5'- gGCGuccGGCuGGGCCguCGggcgGGuUCCGCUGGa -3'
miRNA:   3'- -CGCuu-CCG-CCUGG--GCa---CC-AGGCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 37470 0.66 0.761131
Target:  5'- cGCG-GGGCGGuacgGCCgGUcGUUCGCCGc -3'
miRNA:   3'- -CGCuUCCGCC----UGGgCAcCAGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 71842 0.66 0.761131
Target:  5'- gGCGuuGGCGucuccGGCCCGggggaugggGGUCgGCCaGGu -3'
miRNA:   3'- -CGCuuCCGC-----CUGGGCa--------CCAGgCGG-CC- -5'
21728 5' -61.3 NC_004812.1 + 137807 0.66 0.761131
Target:  5'- gGCGAGGGCGccgcggagcaGGCCCccUGG-CC-CCGGg -3'
miRNA:   3'- -CGCUUCCGC----------CUGGGc-ACCaGGcGGCC- -5'
21728 5' -61.3 NC_004812.1 + 107554 0.66 0.761131
Target:  5'- aCGucGGCGGACUU---GUCCGCCGc -3'
miRNA:   3'- cGCuuCCGCCUGGGcacCAGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 130492 0.66 0.761131
Target:  5'- gGCGggGGgcgaCGGGUCCG-GGUCCuCCGa -3'
miRNA:   3'- -CGCuuCC----GCCUGGGCaCCAGGcGGCc -5'
21728 5' -61.3 NC_004812.1 + 68959 0.66 0.761131
Target:  5'- cGCGAGGGUcgaguGGGuCgUgGUGGUCUGCgGGu -3'
miRNA:   3'- -CGCUUCCG-----CCU-G-GgCACCAGGCGgCC- -5'
21728 5' -61.3 NC_004812.1 + 12364 0.66 0.761131
Target:  5'- gGCgGggGGCGcGCCCGgccgcgCgGCCGGg -3'
miRNA:   3'- -CG-CuuCCGCcUGGGCacca--GgCGGCC- -5'
21728 5' -61.3 NC_004812.1 + 62033 0.66 0.760232
Target:  5'- gGCGGccucGGGCGGAggaggccccgagcCCCGccaccagGG-CCGCCGa -3'
miRNA:   3'- -CGCU----UCCGCCU-------------GGGCa------CCaGGCGGCc -5'
21728 5' -61.3 NC_004812.1 + 56246 0.66 0.760232
Target:  5'- cCGgcGGCGGGCgccggaaCCGUGGccccgcgguUCCuGCUGGa -3'
miRNA:   3'- cGCuuCCGCCUG-------GGCACC---------AGG-CGGCC- -5'
21728 5' -61.3 NC_004812.1 + 72038 0.66 0.758431
Target:  5'- cGCaGGAGGCGGuggaggggggggcuGCCCGcGGUUU-CCGGa -3'
miRNA:   3'- -CG-CUUCCGCC--------------UGGGCaCCAGGcGGCC- -5'
21728 5' -61.3 NC_004812.1 + 146858 0.66 0.752099
Target:  5'- cGCGcc-GCGGGCCUGguggcGGUCCccucCCGGg -3'
miRNA:   3'- -CGCuucCGCCUGGGCa----CCAGGc---GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.