miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 3' -52.9 NC_004812.1 + 98910 0.65 0.985036
Target:  5'- cGGUGGCGCGgcagaagcgcuccuGGCgcuCGAc--CGCGGCCCg -3'
miRNA:   3'- -CUACUGUGC--------------UCG---GCUauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 23494 0.66 0.98376
Target:  5'- gGGUGuGCgGCGGGCCGGg--CGCGGCg- -3'
miRNA:   3'- -CUAC-UG-UGCUCGGCUauaGCGCUGgg -5'
21729 3' -52.9 NC_004812.1 + 149002 0.66 0.98376
Target:  5'- gGGUGuGCgGCGGGCCGGg--CGCGGCg- -3'
miRNA:   3'- -CUAC-UG-UGCUCGGCUauaGCGCUGgg -5'
21729 3' -52.9 NC_004812.1 + 122823 0.66 0.98376
Target:  5'- --cGGCgcaGCGGG-CGAUGUCGuCGGCCg -3'
miRNA:   3'- cuaCUG---UGCUCgGCUAUAGC-GCUGGg -5'
21729 3' -52.9 NC_004812.1 + 124181 0.66 0.98376
Target:  5'- cGUGGgGCG-GCUGGg--CGCGGCCg -3'
miRNA:   3'- cUACUgUGCuCGGCUauaGCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 16853 0.66 0.98376
Target:  5'- --aGGCGCGcGGUCGcgGgggacCGCGACCUg -3'
miRNA:   3'- cuaCUGUGC-UCGGCuaUa----GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 139000 0.66 0.983571
Target:  5'- --gGACACGAgGCCGg---CGCGgaaguccuccgacGCCCa -3'
miRNA:   3'- cuaCUGUGCU-CGGCuauaGCGC-------------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 9673 0.66 0.983189
Target:  5'- --gGACccACGAGCCcgcgaggaaacccaGAggaaaCGCGACCCg -3'
miRNA:   3'- cuaCUG--UGCUCGG--------------CUaua--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 52789 0.66 0.982404
Target:  5'- uGAUGA-ACGuGCUGAccguggucacgucggCGCGACCCa -3'
miRNA:   3'- -CUACUgUGCuCGGCUaua------------GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 68745 0.66 0.981797
Target:  5'- ---aGCACG-GCCauGAUGUCGCuGugCCa -3'
miRNA:   3'- cuacUGUGCuCGG--CUAUAGCG-CugGG- -5'
21729 3' -52.9 NC_004812.1 + 16779 0.66 0.981797
Target:  5'- --aGACGCGuggggcGGCCGAg---GCGACCa -3'
miRNA:   3'- cuaCUGUGC------UCGGCUauagCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 31548 0.66 0.981797
Target:  5'- -cUGcACGCGAGCgaCGAa--CGCGACCUc -3'
miRNA:   3'- cuAC-UGUGCUCG--GCUauaGCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 110289 0.66 0.981797
Target:  5'- gGcgGACugGcggcGGCUGucgcccgCGCGGCCCg -3'
miRNA:   3'- -CuaCUGugC----UCGGCuaua---GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 73898 0.66 0.981797
Target:  5'- --cGGcCGCGGccGCCGA-GUCGCGccaGCCCg -3'
miRNA:   3'- cuaCU-GUGCU--CGGCUaUAGCGC---UGGG- -5'
21729 3' -52.9 NC_004812.1 + 138259 0.66 0.981797
Target:  5'- --cGcCGCGgcGGCCGcgGUCGCGcgccgcGCCCu -3'
miRNA:   3'- cuaCuGUGC--UCGGCuaUAGCGC------UGGG- -5'
21729 3' -52.9 NC_004812.1 + 2984 0.66 0.981797
Target:  5'- --aGACGuCGggcGGCCGGUccaGUUGCcGGCCCa -3'
miRNA:   3'- cuaCUGU-GC---UCGGCUA---UAGCG-CUGGG- -5'
21729 3' -52.9 NC_004812.1 + 110454 0.66 0.981797
Target:  5'- --cGACcuGCuGGCCGAgcgccUGCGGCCCa -3'
miRNA:   3'- cuaCUG--UGcUCGGCUaua--GCGCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 137004 0.66 0.981797
Target:  5'- --cGGCGCGAG-CGAUucgcCGCGGCUg -3'
miRNA:   3'- cuaCUGUGCUCgGCUAua--GCGCUGGg -5'
21729 3' -52.9 NC_004812.1 + 89087 0.66 0.980536
Target:  5'- cGUGGCGCGcaacGCCGAguUCGaggcgcgcgagacgaCGGCCCg -3'
miRNA:   3'- cUACUGUGCu---CGGCUauAGC---------------GCUGGG- -5'
21729 3' -52.9 NC_004812.1 + 94269 0.66 0.979661
Target:  5'- --cGcCGCGGGCgCGcgc-CGCGGCCCg -3'
miRNA:   3'- cuaCuGUGCUCG-GCuauaGCGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.