miRNA display CGI


Results 1 - 20 of 624 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21729 5' -59.3 NC_004812.1 + 79391 0.66 0.843827
Target:  5'- cCCGcGUCgGCCGCGCCa--GCUGGCucGGg -3'
miRNA:   3'- -GGC-UAGgCGGUGUGGccgCGACUG--CC- -5'
21729 5' -59.3 NC_004812.1 + 37129 0.66 0.843827
Target:  5'- cCCGcGUCgGCCGC-CgCGGCGCagagGAgGGc -3'
miRNA:   3'- -GGC-UAGgCGGUGuG-GCCGCGa---CUgCC- -5'
21729 5' -59.3 NC_004812.1 + 145306 0.66 0.843827
Target:  5'- cCCGccCCGCgGCGCCccgcgcGGCGCgccucGugGGc -3'
miRNA:   3'- -GGCuaGGCGgUGUGG------CCGCGa----CugCC- -5'
21729 5' -59.3 NC_004812.1 + 85670 0.66 0.843827
Target:  5'- gCCGcaguacgCCGCC-CGCCuGUaucGCUGGCGGc -3'
miRNA:   3'- -GGCua-----GGCGGuGUGGcCG---CGACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 39059 0.66 0.843827
Target:  5'- aCGggCCGCC-CGCgGGUGUcGGCGu -3'
miRNA:   3'- gGCuaGGCGGuGUGgCCGCGaCUGCc -5'
21729 5' -59.3 NC_004812.1 + 94374 0.66 0.843827
Target:  5'- gCUGGUuuGCCcugGCGgCGGCGUacgcGGCGGc -3'
miRNA:   3'- -GGCUAggCGG---UGUgGCCGCGa---CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 133700 0.66 0.843827
Target:  5'- gCGGgggcgCgGCCACGCCcccgcgcaccucGGCGUgucguUGGCGGg -3'
miRNA:   3'- gGCUa----GgCGGUGUGG------------CCGCG-----ACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 114296 0.66 0.843827
Target:  5'- cCCGggCUGCgGgcgcgaaaugaCAUCGGCGUcGGCGGa -3'
miRNA:   3'- -GGCuaGGCGgU-----------GUGGCCGCGaCUGCC- -5'
21729 5' -59.3 NC_004812.1 + 111327 0.66 0.843827
Target:  5'- gCCaGUCUGcCCGCGgCGGCGCcGACc- -3'
miRNA:   3'- -GGcUAGGC-GGUGUgGCCGCGaCUGcc -5'
21729 5' -59.3 NC_004812.1 + 29492 0.66 0.843827
Target:  5'- aCGGUCCcUCGCGCgGgGCGCccggaGGCGGg -3'
miRNA:   3'- gGCUAGGcGGUGUGgC-CGCGa----CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 133177 0.66 0.843827
Target:  5'- gCGG-CCGCCaggcACACCaGGaCGCcaggGGCGGa -3'
miRNA:   3'- gGCUaGGCGG----UGUGG-CC-GCGa---CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 89517 0.66 0.843827
Target:  5'- uUCGA-CUGCauCGCGCCGGUGgucgaccgcCUGGCGGc -3'
miRNA:   3'- -GGCUaGGCG--GUGUGGCCGC---------GACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 13829 0.66 0.843827
Target:  5'- aCGAggaCCGCgCGCgggcaGCgGGCGCccGGCGGg -3'
miRNA:   3'- gGCUa--GGCG-GUG-----UGgCCGCGa-CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 117206 0.66 0.843827
Target:  5'- cCCGcGUCgGCaCGCACCGccaGCUG-CGGg -3'
miRNA:   3'- -GGC-UAGgCG-GUGUGGCcg-CGACuGCC- -5'
21729 5' -59.3 NC_004812.1 + 58556 0.66 0.843827
Target:  5'- uCCGG-CCGCCcccgaGCCGGCGCccGAgcccgaccCGGa -3'
miRNA:   3'- -GGCUaGGCGGug---UGGCCGCGa-CU--------GCC- -5'
21729 5' -59.3 NC_004812.1 + 95107 0.66 0.843827
Target:  5'- gCGGUCCGCCcCuuUGGgGCggcucugggGGCGGa -3'
miRNA:   3'- gGCUAGGCGGuGugGCCgCGa--------CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 155000 0.66 0.843827
Target:  5'- aCGGUCCcUCGCGCgGgGCGCccggaGGCGGg -3'
miRNA:   3'- gGCUAGGcGGUGUGgC-CGCGa----CUGCC- -5'
21729 5' -59.3 NC_004812.1 + 49923 0.66 0.843827
Target:  5'- cCCGAcgCCGaCCGC-CCGGUGCcGAUc- -3'
miRNA:   3'- -GGCUa-GGC-GGUGuGGCCGCGaCUGcc -5'
21729 5' -59.3 NC_004812.1 + 99458 0.66 0.843055
Target:  5'- aCCGcgUCGCgcagccccagcacCGCGgCGGCGUaccUGGCGGa -3'
miRNA:   3'- -GGCuaGGCG-------------GUGUgGCCGCG---ACUGCC- -5'
21729 5' -59.3 NC_004812.1 + 99644 0.66 0.843055
Target:  5'- cCCgGAUCgGCCGCGgcaagcuCgCGGCGCUGAa-- -3'
miRNA:   3'- -GG-CUAGgCGGUGU-------G-GCCGCGACUgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.