miRNA display CGI


Results 1 - 20 of 435 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 3' -66.2 NC_004812.1 + 130387 0.66 0.464429
Target:  5'- --gCCCCUCGagUCCCGCCu-CCCAGAg -3'
miRNA:   3'- uagGGGGAGU--GGGGCGGccGGGUCUg -5'
21730 3' -66.2 NC_004812.1 + 138162 0.66 0.464429
Target:  5'- -gCCCCCcCGCCgCGCCa--CCGGACg -3'
miRNA:   3'- uaGGGGGaGUGGgGCGGccgGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 54502 0.66 0.464429
Target:  5'- uUCUCCCgcagcgUCGCgUgGCCGGCCUcGACg -3'
miRNA:   3'- uAGGGGG------AGUGgGgCGGCCGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 150079 0.66 0.464429
Target:  5'- -gCCCCCUCGgccCCCCGCCccCCCcuGCu -3'
miRNA:   3'- uaGGGGGAGU---GGGGCGGccGGGucUG- -5'
21730 3' -66.2 NC_004812.1 + 35367 0.66 0.464429
Target:  5'- -aCCCCggCgACCCCGCCcacGGCCUcuGGAUg -3'
miRNA:   3'- uaGGGGgaG-UGGGGCGG---CCGGG--UCUG- -5'
21730 3' -66.2 NC_004812.1 + 76339 0.66 0.464429
Target:  5'- cUCCCgCCgcacCGCCaCCGCCaGGUCCGcGGCc -3'
miRNA:   3'- uAGGG-GGa---GUGG-GGCGG-CCGGGU-CUG- -5'
21730 3' -66.2 NC_004812.1 + 4466 0.66 0.464429
Target:  5'- -aCCCCggCgACCCCGCCcacGGCCUcuGGAUg -3'
miRNA:   3'- uaGGGGgaG-UGGGGCGG---CCGGG--UCUG- -5'
21730 3' -66.2 NC_004812.1 + 119178 0.66 0.464429
Target:  5'- -gCCCCCUCGgccCCCCGCCccCCCcuGCu -3'
miRNA:   3'- uaGGGGGAGU---GGGGCGGccGGGucUG- -5'
21730 3' -66.2 NC_004812.1 + 58625 0.66 0.464429
Target:  5'- -gCCCCCgUGCCUC-CCGGCCCAccgccccagGACc -3'
miRNA:   3'- uaGGGGGaGUGGGGcGGCCGGGU---------CUG- -5'
21730 3' -66.2 NC_004812.1 + 50176 0.66 0.464429
Target:  5'- -gCCCUCUUggGCCCgugGCCGGCgCAGAg -3'
miRNA:   3'- uaGGGGGAG--UGGGg--CGGCCGgGUCUg -5'
21730 3' -66.2 NC_004812.1 + 19617 0.66 0.464429
Target:  5'- aAUCgCUCgcgcCGCCUC-CCGGUCCAGGCg -3'
miRNA:   3'- -UAGgGGGa---GUGGGGcGGCCGGGUCUG- -5'
21730 3' -66.2 NC_004812.1 + 97041 0.66 0.464429
Target:  5'- cGUCCgCCC-CGaCCCGCgaGGCCCAG-Cg -3'
miRNA:   3'- -UAGG-GGGaGUgGGGCGg-CCGGGUCuG- -5'
21730 3' -66.2 NC_004812.1 + 19357 0.66 0.463552
Target:  5'- --aCCCCUCgGCCCCGaCCGcgaaguacucguaGCCCcgGGGCa -3'
miRNA:   3'- uagGGGGAG-UGGGGC-GGC-------------CGGG--UCUG- -5'
21730 3' -66.2 NC_004812.1 + 20580 0.66 0.463552
Target:  5'- gGUCCgCCUCgccgaugGCCCCGCgGG-CgGGGCg -3'
miRNA:   3'- -UAGGgGGAG-------UGGGGCGgCCgGgUCUG- -5'
21730 3' -66.2 NC_004812.1 + 133144 0.66 0.459182
Target:  5'- uUCCCUCgccgcgCGCCUCGCCGacgacccgcucucgcGCCCcGACc -3'
miRNA:   3'- uAGGGGGa-----GUGGGGCGGC---------------CGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 74837 0.66 0.459182
Target:  5'- cGUCCCaCUCgGCCCCG-CGGCCUccagcgagcgccgcaGGGCg -3'
miRNA:   3'- -UAGGGgGAG-UGGGGCgGCCGGG---------------UCUG- -5'
21730 3' -66.2 NC_004812.1 + 7636 0.66 0.459182
Target:  5'- uUCCCUCgccgcgCGCCUCGCCGacgacccgcucucgcGCCCcGACc -3'
miRNA:   3'- uAGGGGGa-----GUGGGGCGGC---------------CGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 98 0.66 0.455701
Target:  5'- -gCUCCCg-GCCCCGCgCGcGCCCcGGCc -3'
miRNA:   3'- uaGGGGGagUGGGGCG-GC-CGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 156508 0.66 0.455701
Target:  5'- -gCUCCCg-GCCCCGCgCGcGCCCcGGCc -3'
miRNA:   3'- uaGGGGGagUGGGGCG-GC-CGGGuCUG- -5'
21730 3' -66.2 NC_004812.1 + 125607 0.66 0.455701
Target:  5'- -gCUCCCg-GCCCCGCgCGcGCCCcGGCc -3'
miRNA:   3'- uaGGGGGagUGGGGCG-GC-CGGGuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.