miRNA display CGI


Results 1 - 20 of 556 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21730 5' -54.2 NC_004812.1 + 129673 0.66 0.976452
Target:  5'- gCUGCGCGGcGAugacgcccGCGGCGcCGuacccGGCGGg -3'
miRNA:   3'- -GAUGUGCCuCU--------CGCUGCuGCu----CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 41 0.66 0.976452
Target:  5'- -cGCGCGGcGGGCcGCGgGCGcGGCGGc -3'
miRNA:   3'- gaUGUGCCuCUCGcUGC-UGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 18944 0.66 0.976452
Target:  5'- -gGCcCGGGaAGCGgaaGCGGCGAGACa- -3'
miRNA:   3'- gaUGuGCCUcUCGC---UGCUGCUCUGcc -5'
21730 5' -54.2 NC_004812.1 + 110393 0.66 0.976452
Target:  5'- uCUGCGCccccGAGCuGCugGACGGGACGGg -3'
miRNA:   3'- -GAUGUGccu-CUCGcUG--CUGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 64106 0.66 0.976452
Target:  5'- -gGCG-GGAGAcgccGCGGCaGACGGGGgGGa -3'
miRNA:   3'- gaUGUgCCUCU----CGCUG-CUGCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 127557 0.66 0.976452
Target:  5'- -gGCgGCGGGGGGCG-CGG-GGGAgGGg -3'
miRNA:   3'- gaUG-UGCCUCUCGCuGCUgCUCUgCC- -5'
21730 5' -54.2 NC_004812.1 + 65204 0.66 0.976452
Target:  5'- -cGCAUGGAGGcCGACGACGccuGCGc -3'
miRNA:   3'- gaUGUGCCUCUcGCUGCUGCuc-UGCc -5'
21730 5' -54.2 NC_004812.1 + 76224 0.66 0.976452
Target:  5'- -cGCGCGGA-AGgGGgGGCGGGcgGCGGa -3'
miRNA:   3'- gaUGUGCCUcUCgCUgCUGCUC--UGCC- -5'
21730 5' -54.2 NC_004812.1 + 30942 0.66 0.976452
Target:  5'- -cGCGCGGcGGGCcGCGgGCGcGGCGGc -3'
miRNA:   3'- gaUGUGCCuCUCGcUGC-UGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 30021 0.66 0.976452
Target:  5'- gUGCGCcagguacccaGGAGGGCGG-GA-GGGGCGGg -3'
miRNA:   3'- gAUGUG----------CCUCUCGCUgCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 155530 0.66 0.976452
Target:  5'- gUGCGCcagguacccaGGAGGGCGG-GA-GGGGCGGg -3'
miRNA:   3'- gAUGUG----------CCUCUCGCUgCUgCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 92232 0.66 0.976452
Target:  5'- -gGC-CGGgagAGGGUGugGccugGCGGGGCGGa -3'
miRNA:   3'- gaUGuGCC---UCUCGCugC----UGCUCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 156451 0.66 0.976452
Target:  5'- -cGCGCGGcGGGCcGCGgGCGcGGCGGc -3'
miRNA:   3'- gaUGUGCCuCUCGcUGC-UGCuCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 35856 0.66 0.976452
Target:  5'- -aGCGCGGGGu-CGcUGGCGcAGGCGGg -3'
miRNA:   3'- gaUGUGCCUCucGCuGCUGC-UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 61519 0.66 0.976452
Target:  5'- gUACACGGAaaggaaGAGCccccgGACGGCG--GCGGu -3'
miRNA:   3'- gAUGUGCCU------CUCG-----CUGCUGCucUGCC- -5'
21730 5' -54.2 NC_004812.1 + 4164 0.66 0.976452
Target:  5'- gCUGCGCGGcGAugacgcccGCGGCGcCGuacccGGCGGg -3'
miRNA:   3'- -GAUGUGCCuCU--------CGCUGCuGCu----CUGCC- -5'
21730 5' -54.2 NC_004812.1 + 140955 0.66 0.976452
Target:  5'- -gACGCGGgcgugcucgcGGAGCGcGCGAC-AGGCGa -3'
miRNA:   3'- gaUGUGCC----------UCUCGC-UGCUGcUCUGCc -5'
21730 5' -54.2 NC_004812.1 + 72235 0.66 0.976452
Target:  5'- aCUGCgGCGGGGcguccGGuCGGCGggcGCGAGACuGGa -3'
miRNA:   3'- -GAUG-UGCCUC-----UC-GCUGC---UGCUCUG-CC- -5'
21730 5' -54.2 NC_004812.1 + 89556 0.66 0.976452
Target:  5'- -gACcCGGAGgcucAGCccGACGACGgcGGGCGGu -3'
miRNA:   3'- gaUGuGCCUC----UCG--CUGCUGC--UCUGCC- -5'
21730 5' -54.2 NC_004812.1 + 2048 0.66 0.976452
Target:  5'- -gGCgGCGGGGGGCG-CGG-GGGAgGGg -3'
miRNA:   3'- gaUG-UGCCUCUCGCuGCUgCUCUgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.