miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22276 5' -57.3 NC_005045.1 + 23368 0.66 0.531635
Target:  5'- --uGCGGCuGCUggGUCGGgAUGGCCa -3'
miRNA:   3'- gguCGUCGuCGGuaCGGUCgUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 7919 0.66 0.531635
Target:  5'- --uGCAGCAGaCC-UGCaAGCGCG-CCu -3'
miRNA:   3'- gguCGUCGUC-GGuACGgUCGUGCuGG- -5'
22276 5' -57.3 NC_005045.1 + 30551 0.66 0.531635
Target:  5'- cCCGGCGGa---CAUGCuCAGaACGGCCu -3'
miRNA:   3'- -GGUCGUCgucgGUACG-GUCgUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 5230 0.66 0.531635
Target:  5'- -aAGCuGCccuGGCCguGUGCCAGCAgCGGgCa -3'
miRNA:   3'- ggUCGuCG---UCGG--UACGGUCGU-GCUgG- -5'
22276 5' -57.3 NC_005045.1 + 33898 0.66 0.527343
Target:  5'- cCCAGgGGCGGCCucauccaucugaGCCAucUugGACCa -3'
miRNA:   3'- -GGUCgUCGUCGGua----------CGGUc-GugCUGG- -5'
22276 5' -57.3 NC_005045.1 + 30830 0.66 0.520929
Target:  5'- gCGGCuuguGCuGCUcgGCCAGgACGGuuCCg -3'
miRNA:   3'- gGUCGu---CGuCGGuaCGGUCgUGCU--GG- -5'
22276 5' -57.3 NC_005045.1 + 36239 0.66 0.520929
Target:  5'- -aAGCGGUugauGGUCAcGCCAGgGcCGGCCa -3'
miRNA:   3'- ggUCGUCG----UCGGUaCGGUCgU-GCUGG- -5'
22276 5' -57.3 NC_005045.1 + 38501 0.66 0.520929
Target:  5'- aCCGGCGaugaAGCCcu-CCAGCGCGAUa -3'
miRNA:   3'- -GGUCGUcg--UCGGuacGGUCGUGCUGg -5'
22276 5' -57.3 NC_005045.1 + 7962 0.66 0.520929
Target:  5'- cCCGGCAGguGuCCGUGgUAGUgagGCGugaugcGCCg -3'
miRNA:   3'- -GGUCGUCguC-GGUACgGUCG---UGC------UGG- -5'
22276 5' -57.3 NC_005045.1 + 28800 0.66 0.519864
Target:  5'- aCCAGCGGgGaccguugccccGCCGUGguacucuucugacCCAGCAggcCGGCCu -3'
miRNA:   3'- -GGUCGUCgU-----------CGGUAC-------------GGUCGU---GCUGG- -5'
22276 5' -57.3 NC_005045.1 + 5856 0.66 0.51031
Target:  5'- -gAGCAGCAGCUuuucguacucGUCGGCGCGcuucgcgucgGCCu -3'
miRNA:   3'- ggUCGUCGUCGGua--------CGGUCGUGC----------UGG- -5'
22276 5' -57.3 NC_005045.1 + 32023 0.66 0.51031
Target:  5'- aUAGgAGguaGGCCGcguccuuggcauUGCCGGCACgGGCCa -3'
miRNA:   3'- gGUCgUCg--UCGGU------------ACGGUCGUG-CUGG- -5'
22276 5' -57.3 NC_005045.1 + 26808 0.66 0.51031
Target:  5'- -gAGcCGGUGGCCAUGaCAGCGcCGuCCa -3'
miRNA:   3'- ggUC-GUCGUCGGUACgGUCGU-GCuGG- -5'
22276 5' -57.3 NC_005045.1 + 32993 0.66 0.51031
Target:  5'- aCCGGCGGCgcGGUCuUGCUucagggcguugAGCACGuuACCc -3'
miRNA:   3'- -GGUCGUCG--UCGGuACGG-----------UCGUGC--UGG- -5'
22276 5' -57.3 NC_005045.1 + 9301 0.66 0.499781
Target:  5'- uUCGGCAG-GGaCAgGCCAcGCAUGACCu -3'
miRNA:   3'- -GGUCGUCgUCgGUaCGGU-CGUGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 41935 0.66 0.499781
Target:  5'- cUCGaCAGCAGCCA--UCAGCucgucgagguguGCGACCa -3'
miRNA:   3'- -GGUcGUCGUCGGUacGGUCG------------UGCUGG- -5'
22276 5' -57.3 NC_005045.1 + 13713 0.66 0.499781
Target:  5'- aCCAGacCGGguGCC-UGCCgggAGUACG-CCg -3'
miRNA:   3'- -GGUC--GUCguCGGuACGG---UCGUGCuGG- -5'
22276 5' -57.3 NC_005045.1 + 12931 0.66 0.499781
Target:  5'- gCCAgGCGGUacaAGUgCAUGUCAGUGcCGGCCa -3'
miRNA:   3'- -GGU-CGUCG---UCG-GUACGGUCGU-GCUGG- -5'
22276 5' -57.3 NC_005045.1 + 7017 0.66 0.499781
Target:  5'- gCCAGCucGGCGGcCCGUaCCAGUucaGCG-CCg -3'
miRNA:   3'- -GGUCG--UCGUC-GGUAcGGUCG---UGCuGG- -5'
22276 5' -57.3 NC_005045.1 + 2636 0.66 0.498733
Target:  5'- aCCAGgAGUuuaaccuGGCCGcUGCCcuGGCcACGAUCa -3'
miRNA:   3'- -GGUCgUCG-------UCGGU-ACGG--UCG-UGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.