miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22871 3' -58 NC_005137.2 + 122376 0.66 0.785356
Target:  5'- -aAUAGCACGcccACGcCCGCCGCcuuaGCGCc- -3'
miRNA:   3'- cgUGUCGUGU---UGC-GGCGGCG----CGUGuu -5'
22871 3' -58 NC_005137.2 + 35366 0.66 0.785356
Target:  5'- -aACAaCACGcagGCGCCGCUGUGgACAAu -3'
miRNA:   3'- cgUGUcGUGU---UGCGGCGGCGCgUGUU- -5'
22871 3' -58 NC_005137.2 + 47225 0.66 0.785356
Target:  5'- -aACuGCGCugaagacuGCGCCGCUGCGguCGu -3'
miRNA:   3'- cgUGuCGUGu-------UGCGGCGGCGCguGUu -5'
22871 3' -58 NC_005137.2 + 57468 0.66 0.785356
Target:  5'- cGCAacgaGGcCACGACGCCGuUUGCGCGu-- -3'
miRNA:   3'- -CGUg---UC-GUGUUGCGGC-GGCGCGUguu -5'
22871 3' -58 NC_005137.2 + 102745 0.66 0.785356
Target:  5'- aGCAC-GUagACGACGCgGUgGCGUGCGAg -3'
miRNA:   3'- -CGUGuCG--UGUUGCGgCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 99517 0.66 0.785356
Target:  5'- aCACGaCGCAAUuuuuaccggaaGCgUGCCGCGCACAAg -3'
miRNA:   3'- cGUGUcGUGUUG-----------CG-GCGGCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 48764 0.66 0.784425
Target:  5'- -gGCGGCGCGaucguuggacgcgGCGCCGCacaGCGUguGCGg -3'
miRNA:   3'- cgUGUCGUGU-------------UGCGGCGg--CGCG--UGUu -5'
22871 3' -58 NC_005137.2 + 63707 0.66 0.779753
Target:  5'- uGCGCAGCGCAacagagacaaACGCUuagagugucccauguGCCGaCGCAa-- -3'
miRNA:   3'- -CGUGUCGUGU----------UGCGG---------------CGGC-GCGUguu -5'
22871 3' -58 NC_005137.2 + 93459 0.66 0.775992
Target:  5'- uGCAUacgGGCACggUGCgCGCCaGCGC-CGu -3'
miRNA:   3'- -CGUG---UCGUGuuGCG-GCGG-CGCGuGUu -5'
22871 3' -58 NC_005137.2 + 122315 0.66 0.775992
Target:  5'- aGCGCGaauaaugucuuGCACaAGCGUgGCCGCGCu--- -3'
miRNA:   3'- -CGUGU-----------CGUG-UUGCGgCGGCGCGuguu -5'
22871 3' -58 NC_005137.2 + 79677 0.66 0.775992
Target:  5'- gGCGCGGCggcggACGACcCCGCUGCGuUACu- -3'
miRNA:   3'- -CGUGUCG-----UGUUGcGGCGGCGC-GUGuu -5'
22871 3' -58 NC_005137.2 + 88100 0.66 0.775992
Target:  5'- gGCAU-GCACGGCGaCGCCGUGUgaaaACAc -3'
miRNA:   3'- -CGUGuCGUGUUGCgGCGGCGCG----UGUu -5'
22871 3' -58 NC_005137.2 + 5893 0.66 0.775992
Target:  5'- -aGCGGCGCGGC-CCGCCGC-UugAGu -3'
miRNA:   3'- cgUGUCGUGUUGcGGCGGCGcGugUU- -5'
22871 3' -58 NC_005137.2 + 100129 0.66 0.775992
Target:  5'- gGCuGCGGCGCAuugGCGUUcgGUCGUGCACGc -3'
miRNA:   3'- -CG-UGUCGUGU---UGCGG--CGGCGCGUGUu -5'
22871 3' -58 NC_005137.2 + 103693 0.66 0.775992
Target:  5'- cCACuGCcCAaaACGCCGCCGC-CACc- -3'
miRNA:   3'- cGUGuCGuGU--UGCGGCGGCGcGUGuu -5'
22871 3' -58 NC_005137.2 + 32634 0.66 0.775992
Target:  5'- aGCcCGuCGCGACGgCGCCaaaccgGCGCACAAg -3'
miRNA:   3'- -CGuGUcGUGUUGCgGCGG------CGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 14880 0.66 0.775992
Target:  5'- uGUAgGGUGCgaGugGCCGCCuguauuuuguccGCGCACAc -3'
miRNA:   3'- -CGUgUCGUG--UugCGGCGG------------CGCGUGUu -5'
22871 3' -58 NC_005137.2 + 123056 0.66 0.775992
Target:  5'- cGC-CGGU-CGAgGUCGCgGCGCGCAGc -3'
miRNA:   3'- -CGuGUCGuGUUgCGGCGgCGCGUGUU- -5'
22871 3' -58 NC_005137.2 + 117563 0.66 0.775992
Target:  5'- uGUAcCGGCAaaguGCGCCGCCG-GUGCGg -3'
miRNA:   3'- -CGU-GUCGUgu--UGCGGCGGCgCGUGUu -5'
22871 3' -58 NC_005137.2 + 50166 0.66 0.766497
Target:  5'- -gGCAGCACAAacgucgaguccgUGUCGCCGUagaGCACu- -3'
miRNA:   3'- cgUGUCGUGUU------------GCGGCGGCG---CGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.