miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22969 3' -52.8 NC_005137.2 + 98164 0.66 0.971215
Target:  5'- aCGUGCACGCuGGCcacUUGGCGg--GCGCa -3'
miRNA:   3'- cGCGCGUGUG-UCG---AAUCGUgcaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 1585 0.66 0.971215
Target:  5'- uCGUGCACAaaauGCaaaAGCGCGUguuuaaucgGCGCg -3'
miRNA:   3'- cGCGCGUGUgu--CGaa-UCGUGCA---------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 61854 0.66 0.971215
Target:  5'- cUGCGC-CACcGUUauaaaauuuuGCGCGUACGCu -3'
miRNA:   3'- cGCGCGuGUGuCGAau--------CGUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 88509 0.66 0.971215
Target:  5'- uCGC-CGCGCAGCa-AGCGCcguGUGCGUu -3'
miRNA:   3'- cGCGcGUGUGUCGaaUCGUG---CAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 124551 0.66 0.970921
Target:  5'- uGCGCGCugaaacgACGCGcGCgcAGCAUG-ACGUu -3'
miRNA:   3'- -CGCGCG-------UGUGU-CGaaUCGUGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 69026 0.66 0.970921
Target:  5'- gGCGCGCAUcCGGCUUGaacuggaauuugcGgACGU-UGCa -3'
miRNA:   3'- -CGCGCGUGuGUCGAAU-------------CgUGCAuGCG- -5'
22969 3' -52.8 NC_005137.2 + 64301 0.66 0.970921
Target:  5'- aCGCGCAgGguGCgcuuccacGCACGUcauaagcACGCg -3'
miRNA:   3'- cGCGCGUgUguCGaau-----CGUGCA-------UGCG- -5'
22969 3' -52.8 NC_005137.2 + 87237 0.66 0.970326
Target:  5'- cCGCGUGCACGGCguucauGCcuucggcaauuucaACGgGCGCg -3'
miRNA:   3'- cGCGCGUGUGUCGaau---CG--------------UGCaUGCG- -5'
22969 3' -52.8 NC_005137.2 + 5644 0.66 0.968175
Target:  5'- aCGCGUAauCAGCUcugcgGGCACGgugcCGCg -3'
miRNA:   3'- cGCGCGUguGUCGAa----UCGUGCau--GCG- -5'
22969 3' -52.8 NC_005137.2 + 123267 0.66 0.968175
Target:  5'- aCGUGCACAcCGGCgcAGCuccauUGCGCa -3'
miRNA:   3'- cGCGCGUGU-GUCGaaUCGugc--AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 100172 0.66 0.968175
Target:  5'- cGCGUGCuuGCGCAccGCUggAGUugGUG-GCg -3'
miRNA:   3'- -CGCGCG--UGUGU--CGAa-UCGugCAUgCG- -5'
22969 3' -52.8 NC_005137.2 + 122451 0.66 0.968175
Target:  5'- uCGCGCucucaacaACACgGGCggcAGCuauuACGUACGCg -3'
miRNA:   3'- cGCGCG--------UGUG-UCGaa-UCG----UGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 44425 0.66 0.968175
Target:  5'- aGCGCGCaACGCu-CUUgaGGaacguUACGUGCGCg -3'
miRNA:   3'- -CGCGCG-UGUGucGAA--UC-----GUGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 31004 0.66 0.968175
Target:  5'- cCGCGCACGCuGgUcGGCGCcgcUACGUc -3'
miRNA:   3'- cGCGCGUGUGuCgAaUCGUGc--AUGCG- -5'
22969 3' -52.8 NC_005137.2 + 100137 0.66 0.968175
Target:  5'- -aGCG-GCACAGCUcgccCACGUACGg -3'
miRNA:   3'- cgCGCgUGUGUCGAauc-GUGCAUGCg -5'
22969 3' -52.8 NC_005137.2 + 104460 0.66 0.964913
Target:  5'- cGCaGCGC-CACGaCUUGuuGCACGUgugauGCGCa -3'
miRNA:   3'- -CG-CGCGuGUGUcGAAU--CGUGCA-----UGCG- -5'
22969 3' -52.8 NC_005137.2 + 97395 0.66 0.964913
Target:  5'- cCGCGCAaauaaguuUGCAGgUUgGGCACGUACa- -3'
miRNA:   3'- cGCGCGU--------GUGUCgAA-UCGUGCAUGcg -5'
22969 3' -52.8 NC_005137.2 + 81764 0.66 0.964913
Target:  5'- gGCGUGUGCACGacccuGCUUAcugcuGCcGCGUcACGCg -3'
miRNA:   3'- -CGCGCGUGUGU-----CGAAU-----CG-UGCA-UGCG- -5'
22969 3' -52.8 NC_005137.2 + 93617 0.66 0.964913
Target:  5'- gGCGCugGCGCGCAcCgu-GCcCGUAUGCa -3'
miRNA:   3'- -CGCG--CGUGUGUcGaauCGuGCAUGCG- -5'
22969 3' -52.8 NC_005137.2 + 112401 0.66 0.964233
Target:  5'- cGCGauCGCGCACGGCgcgccauuguGCAaGUACGg -3'
miRNA:   3'- -CGC--GCGUGUGUCGaau-------CGUgCAUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.