Results 1 - 20 of 167 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22969 | 3' | -52.8 | NC_005137.2 | + | 98164 | 0.66 | 0.971215 |
Target: 5'- aCGUGCACGCuGGCcacUUGGCGg--GCGCa -3' miRNA: 3'- cGCGCGUGUG-UCG---AAUCGUgcaUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 93789 | 0.67 | 0.953739 |
Target: 5'- uCGuCGCACAaacauGCgugAGCACGUACa- -3' miRNA: 3'- cGC-GCGUGUgu---CGaa-UCGUGCAUGcg -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 43968 | 0.67 | 0.945083 |
Target: 5'- cGgGCGCGgGCGGCUgcucguGC-CGU-CGCu -3' miRNA: 3'- -CgCGCGUgUGUCGAau----CGuGCAuGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 110865 | 0.85 | 0.182022 |
Target: 5'- uGCGCGCACACcGUUgcGCACGcGCGCa -3' miRNA: 3'- -CGCGCGUGUGuCGAauCGUGCaUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 87237 | 0.66 | 0.970326 |
Target: 5'- cCGCGUGCACGGCguucauGCcuucggcaauuucaACGgGCGCg -3' miRNA: 3'- cGCGCGUGUGUCGaau---CG--------------UGCaUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 100172 | 0.66 | 0.968175 |
Target: 5'- cGCGUGCuuGCGCAccGCUggAGUugGUG-GCg -3' miRNA: 3'- -CGCGCG--UGUGU--CGAa-UCGugCAUgCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 5644 | 0.66 | 0.968175 |
Target: 5'- aCGCGUAauCAGCUcugcgGGCACGgugcCGCg -3' miRNA: 3'- cGCGCGUguGUCGAa----UCGUGCau--GCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 44425 | 0.66 | 0.968175 |
Target: 5'- aGCGCGCaACGCu-CUUgaGGaacguUACGUGCGCg -3' miRNA: 3'- -CGCGCG-UGUGucGAA--UC-----GUGCAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 81764 | 0.66 | 0.964913 |
Target: 5'- gGCGUGUGCACGacccuGCUUAcugcuGCcGCGUcACGCg -3' miRNA: 3'- -CGCGCGUGUGU-----CGAAU-----CG-UGCA-UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 116840 | 0.66 | 0.9577 |
Target: 5'- -aGCGUACACgugcgugccgGGCUUuauGUACaUGCGCg -3' miRNA: 3'- cgCGCGUGUG----------UCGAAu--CGUGcAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 78751 | 0.66 | 0.959962 |
Target: 5'- gGCGCGCGuuugacguucUACGGUggcaaaccugugcUGGCACGguuugACGCu -3' miRNA: 3'- -CGCGCGU----------GUGUCGa------------AUCGUGCa----UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 93617 | 0.66 | 0.964913 |
Target: 5'- gGCGCugGCGCGCAcCgu-GCcCGUAUGCa -3' miRNA: 3'- -CGCG--CGUGUGUcGaauCGuGCAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 1585 | 0.66 | 0.971215 |
Target: 5'- uCGUGCACAaaauGCaaaAGCGCGUguuuaaucgGCGCg -3' miRNA: 3'- cGCGCGUGUgu--CGaa-UCGUGCA---------UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 99386 | 0.66 | 0.959962 |
Target: 5'- gGCGCGCGCccaaaacaaucauACaAGCUgaUagauuuguacaagcGGCACGUGgGCg -3' miRNA: 3'- -CGCGCGUG-------------UG-UCGA--A--------------UCGUGCAUgCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 124551 | 0.66 | 0.970921 |
Target: 5'- uGCGCGCugaaacgACGCGcGCgcAGCAUG-ACGUu -3' miRNA: 3'- -CGCGCG-------UGUGU-CGaaUCGUGCaUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 122451 | 0.66 | 0.968175 |
Target: 5'- uCGCGCucucaacaACACgGGCggcAGCuauuACGUACGCg -3' miRNA: 3'- cGCGCG--------UGUG-UCGaa-UCG----UGCAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 78276 | 0.66 | 0.9577 |
Target: 5'- uUGCGUucuuUACuaauucGCUUacguugGGCACGUACGCg -3' miRNA: 3'- cGCGCGu---GUGu-----CGAA------UCGUGCAUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 97393 | 0.67 | 0.953739 |
Target: 5'- uUGUGgACAaacCGGCUgagAGCAUGcUGCGCg -3' miRNA: 3'- cGCGCgUGU---GUCGAa--UCGUGC-AUGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 64301 | 0.66 | 0.970921 |
Target: 5'- aCGCGCAgGguGCgcuuccacGCACGUcauaagcACGCg -3' miRNA: 3'- cGCGCGUgUguCGaau-----CGUGCA-------UGCG- -5' |
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22969 | 3' | -52.8 | NC_005137.2 | + | 123267 | 0.66 | 0.968175 |
Target: 5'- aCGUGCACAcCGGCgcAGCuccauUGCGCa -3' miRNA: 3'- cGCGCGUGU-GUCGaaUCGugc--AUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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